EnhancerDB
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  3. vista1[chr1:839741-840250]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1[chr1:839741-840250]
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Tissue distribution of vista1
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Transcription factor that possibly regulate vista1[chr1:839741-840250]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 839802 841023 POLR2A UCSC Txn Factor no Conserved 107801756
chr1 839739 839750 ESRRA JASPAR yes 26170987
chr1 839739 839750 ESRRA JASPAR yes 118212986
chr1 839743 839747 ESR1 TRANSFAC yes 26170988
chr1 839743 839747 ESR1 TRANSFAC yes 118212987
chr1 839761 839766 SP1 TRANSFAC yes 26170989
chr1 839761 839766 SP1 TRANSFAC yes 118212988
chr1 839762 839776 GLIS3 JASPAR yes 26170990
chr1 839762 839776 GLIS3 JASPAR yes 118212989
chr1 839775 839784 TFAP2A JASPAR yes 26170991
chr1 839775 839784 TFAP2A JASPAR yes 118212990
chr1 839782 839786 H4TF2 TRANSFAC yes 26170992
chr1 839782 839786 H4TF2 TRANSFAC yes 118212991
chr1 839801 839811 SP1 JASPAR yes 26170993
chr1 839801 839811 SP1 JASPAR yes 118212992
chr1 839805 839826 ZNF263 JASPAR yes 26170994
chr1 839805 839826 ZNF263 JASPAR yes 118212993
chr1 839807 839813 SP1 TRANSFAC yes 26170995
chr1 839807 839813 SP1 TRANSFAC yes 118212994
chr1 839807 839817 SP1 JASPAR yes 26170996
chr1 839807 839817 SP1 JASPAR yes 118212995
chr1 839809 839814 SP1 TRANSFAC yes 26170997
chr1 839809 839814 SP1 TRANSFAC yes 118212996
chr1 839810 839825 NR2C2 JASPAR yes 26170998
chr1 839810 839825 NR2C2 JASPAR yes 118212997
chr1 839811 839832 ZNF263 JASPAR yes 26170999
chr1 839811 839832 ZNF263 JASPAR yes 118212998
chr1 839817 839838 ZNF263 JASPAR yes 26171000
chr1 839817 839838 ZNF263 JASPAR yes 118212999
chr1 839819 839829 SP1 JASPAR yes 26171001
chr1 839819 839829 SP1 JASPAR yes 118213000
chr1 839822 839832 SP1 JASPAR yes 26171002
chr1 839822 839832 SP1 JASPAR yes 118213001
chr1 839825 839835 MZF1 JASPAR yes 26171003
chr1 839825 839835 MZF1 JASPAR yes 118213002
chr1 839827 839837 ZNF740 JASPAR yes 26171004
chr1 839827 839837 ZNF740 JASPAR yes 118213003
chr1 839828 839834 SP1 TRANSFAC yes 26171005
chr1 839828 839834 SP1 TRANSFAC yes 118213004
chr1 839845 839857 GLI2 JASPAR yes 26171006
chr1 839845 839857 GLI2 JASPAR yes 118213005
chr1 839879 839889 SP1 JASPAR yes 26171007
chr1 839879 839889 SP1 JASPAR yes 118213006
chr1 839917 839927 SP1 JASPAR yes 26171008
chr1 839917 839927 SP1 JASPAR yes 118213007
chr1 839939 839949 SP1 JASPAR yes 26171009
chr1 839939 839949 SP1 JASPAR yes 118213008
chr1 839977 839987 SP1 JASPAR yes 26171010
chr1 839977 839987 SP1 JASPAR yes 118213009
chr1 840034 840044 SP1 JASPAR yes 26171011
chr1 840034 840044 SP1 JASPAR yes 118213010
chr1 840037 840047 SP1 JASPAR yes 26171012
chr1 840037 840047 SP1 JASPAR yes 118213011
chr1 840059 840069 SP1 JASPAR yes 26171013
chr1 840059 840069 SP1 JASPAR yes 118213012
chr1 840115 840126 ELK4 JASPAR yes 26171014
chr1 840115 840126 ELK4 JASPAR yes 118213013
chr1 840116 840126 ETV6 JASPAR yes 26171015
chr1 840116 840126 ETV6 JASPAR yes 118213014
chr1 840118 840124 ETS1 JASPAR yes 26171016
chr1 840118 840124 SPI1 JASPAR yes 26171017
chr1 840118 840124 ETS1 JASPAR yes 118213015
chr1 840118 840124 SPI1 JASPAR yes 118213016
chr1 840147 840166 CTCF JASPAR yes 26171018
chr1 840147 840166 CTCF JASPAR yes 118213017
chr1 840170 840181 E2F4 JASPAR yes 26171019
chr1 840170 840181 E2F4 JASPAR yes 118213018
chr1 840174 840185 NRF1 JASPAR yes 26171020
chr1 840174 840185 NRF1 JASPAR yes 118213019
chr1 840184 840196 E2F8 JASPAR yes 26171021
chr1 840184 840196 E2F8 JASPAR yes 118213020
chr1 840192 840198 HiNF-A TRANSFAC yes 26171022
chr1 840192 840198 HiNF-A TRANSFAC yes 118213021
chr1 840196 840202 SOX10 JASPAR yes 26171023
chr1 840196 840202 SOX10 JASPAR yes 118213022
chr1 840220 840230 HEY2 JASPAR yes 26171024
chr1 840220 840230 HEY2 JASPAR yes 118213023
chr1 840227 840236 TFAP2A JASPAR yes 26171025
chr1 840227 840236 TFAP2A JASPAR yes 118213024
chr1 840240 840250 REL JASPAR yes 26171026
chr1 840240 840250 REL JASPAR yes 118213025
chr1 840240 840251 NFKB1 JASPAR yes 26171027
chr1 840240 840251 NFKB1 JASPAR yes 118213026
SNP sites on vista1[chr1:839741-840250]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 839797 rs544279786 G A no 721
chr1 839839 rs540474316 G T
POLR2A
722
chr1 839900 rs551089240 T G
POLR2A
723
chr1 840004 rs545802769 G C
POLR2A
724
chr1 840039 rs562868505 T G
POLR2A SP1
725
chr1 840043 rs531646385 C T
POLR2A SP1
726
chr1 840226 rs569746808 G GT
HEY2 POLR2A
727
Genes possibly regulated by vista1[chr1:839741-840250]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 818043 819983 + AL645608.2 ENSG00000269308.1 818043 0.0 0.0 4 78302
chr1 860260 879955 + SAMD11 ENSG00000187634.6 860260 0.92 1.0 5 79990
chr1 861264 866445 - AL645608.1 ENSG00000268179.1 866445 1.0 1.0 6 73805
chr1 879584 894689 - NOC2L ENSG00000188976.6 894689 0.69 1.0 7 45561
chr1 895967 901095 + KLHL17 ENSG00000187961.9 895967 0.67 1.0 8 44283
chr1 901877 911245 + PLEKHN1 ENSG00000187583.6 901877 0.96 1.0 9 38373
chr1 910579 917497 - C1orf170 ENSG00000187642.5 917497 0.99 1.0 10 22753
chr1 934342 935552 - HES4 ENSG00000188290.6 935552 0.71 1.0 11 4698
Expression level of Genes
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miRNAs possibly regulated by vista1[chr1:839741-840250]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results