EnhancerDB
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  3. vista1000[chr1:28641770-28641993]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1000[chr1:28641770-28641993]
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Tissue distribution of vista1000
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Transcription factor that possibly regulate vista1000[chr1:28641770-28641993]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28641765 28641771 LEF1 TRANSFAC yes 27759625
chr1 28641765 28641771 SOX10 JASPAR yes 27759626
chr1 28641765 28641771 LEF1 TRANSFAC yes 118262815
chr1 28641765 28641771 SOX10 JASPAR yes 118262816
chr1 28641778 28641795 PAX1 JASPAR yes 27759627
chr1 28641778 28641795 PAX9 JASPAR yes 27759628
chr1 28641778 28641795 PAX1 JASPAR yes 118262817
chr1 28641778 28641795 PAX9 JASPAR yes 118262818
chr1 28641793 28641806 ZBTB18 JASPAR yes 27759629
chr1 28641793 28641806 ZBTB18 JASPAR yes 118262819
chr1 28641843 28641859 T JASPAR yes 27759630
chr1 28641843 28641859 T JASPAR yes 118262820
chr1 28641848 28641857 SOX9 JASPAR yes 27759631
chr1 28641848 28641857 SOX9 JASPAR yes 118262821
chr1 28641861 28641867 ATF1 TRANSFAC yes 27759632
chr1 28641861 28641867 ATF1 TRANSFAC yes 118262822
chr1 28641861 28641868 XBP1 TRANSFAC yes 27759633
chr1 28641861 28641868 XBP1 TRANSFAC yes 118262823
chr1 28641872 28641876 YY1 TRANSFAC yes 27759634
chr1 28641872 28641876 YY1 TRANSFAC yes 118262824
chr1 28641872 28641882 ETV6 JASPAR yes 27759635
chr1 28641872 28641882 ETV6 JASPAR yes 118262825
chr1 28641872 28641883 ETV2 JASPAR yes 27759636
chr1 28641872 28641883 ETV2 JASPAR yes 118262826
chr1 28641872 28641885 ELF1 JASPAR yes 27759637
chr1 28641872 28641885 ELF1 JASPAR yes 118262827
chr1 28641872 28641886 SPIC JASPAR yes 27759638
chr1 28641872 28641886 SPIC JASPAR yes 118262828
chr1 28641873 28641881 FEV JASPAR yes 27759639
chr1 28641873 28641881 FEV JASPAR yes 118262829
chr1 28641875 28641882 SPIB JASPAR yes 27759640
chr1 28641875 28641882 SPIB JASPAR yes 118262830
chr1 28641880 28641888 GATA3 JASPAR yes 27759641
chr1 28641880 28641888 GATA3 JASPAR yes 118262831
chr1 28641882 28641899 RARA JASPAR yes 27759642
chr1 28641882 28641899 RARA JASPAR yes 118262832
chr1 28641888 28641892 TEAD2 TRANSFAC yes 27759643
chr1 28641888 28641892 TEAD2 TRANSFAC yes 118262833
chr1 28641889 28641899 POU6F2 JASPAR yes 27759644
chr1 28641889 28641899 POU6F2 JASPAR yes 118262834
chr1 28641891 28641902 ESRRB JASPAR yes 27759645
chr1 28641891 28641902 ESRRB JASPAR yes 118262835
chr1 28641893 28641903 RORA JASPAR yes 27759646
chr1 28641893 28641903 RORA JASPAR yes 118262836
chr1 28641911 28641926 TFAP2A JASPAR yes 27759647
chr1 28641911 28641926 TFAP2C JASPAR yes 27759648
chr1 28641911 28641926 TFAP2A JASPAR yes 118262837
chr1 28641911 28641926 TFAP2C JASPAR yes 118262838
chr1 28641929 28641939 HOXB13 JASPAR yes 27759649
chr1 28641929 28641939 HOXB13 JASPAR yes 118262839
chr1 28641929 28641944 STAT1 JASPAR yes 27759650
chr1 28641929 28641944 STAT1 JASPAR yes 118262840
chr1 28641929 28641946 RXRA JASPAR yes 27759651
chr1 28641929 28641946 RXRA JASPAR yes 118262841
chr1 28641931 28641942 STAT1 JASPAR yes 27759652
chr1 28641931 28641942 STAT1 JASPAR yes 118262842
chr1 28641934 28641944 ERF JASPAR yes 27759653
chr1 28641934 28641944 ERF JASPAR yes 118262843
chr1 28641936 28641943 SPI1 JASPAR yes 27759654
chr1 28641936 28641943 SPI1 JASPAR yes 118262844
chr1 28641944 28641965 MAFG JASPAR yes 27759655
chr1 28641944 28641965 MAFG JASPAR yes 118262845
chr1 28641950 28641954 NFE TRANSFAC yes 27759656
chr1 28641950 28641954 NFE TRANSFAC yes 118262846
chr1 28641954 28641974 TP53 JASPAR yes 27759657
chr1 28641954 28641974 TP53 JASPAR yes 118262847
chr1 28641966 28641979 SMAD2 JASPAR yes 27759658
chr1 28641966 28641979 SMAD2 JASPAR yes 118262848
SNP sites on vista1000[chr1:28641770-28641993]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28641825 rs7528486 C A no 191628
chr1 28641907 rs117251070 G A no 191629
chr1 28641914 rs532814737 C A
TFAP2A TFAP2C
191630
chr1 28641988 rs142896108 G A no 191631
Genes possibly regulated by vista1000[chr1:28641770-28641993]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28525967 28559536 - DNAJC8 ENSG00000126698.6 28559536 0.64 0.99 406 17766
chr1 28562620 28573417 + ATPIF1 ENSG00000130770.13 28562620 0.9 0.99 409 20850
chr1 28586038 28609002 + SESN2 ENSG00000130766.4 28586038 0.78 1.0 410 44268
chr1 28655513 28662476 + MED18 ENSG00000130772.9 28655513 0.61 1.0 411 86480
chr1 28696114 28826881 + PHACTR4 ENSG00000204138.8 28696114 0.81 1.0 412 45879
Expression level of Genes
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miRNAs possibly regulated by vista1000[chr1:28641770-28641993]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results