EnhancerDB
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  3. vista1001[chr1:28752190-28752435]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1001[chr1:28752190-28752435]
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Tissue distribution of vista1001
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Transcription factor that possibly regulate vista1001[chr1:28752190-28752435]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 28752202 28752207 GATA2 JASPAR yes 27770063
chr1 28752202 28752207 GATA2 JASPAR yes 118262849
chr1 28752223 28752244 IRF1 JASPAR yes 27770064
chr1 28752223 28752244 IRF1 JASPAR yes 118262850
chr1 28752244 28752258 IRF7 JASPAR yes 27770065
chr1 28752244 28752258 IRF7 JASPAR yes 118262851
chr1 28752269 28752277 PAX4 JASPAR yes 27770066
chr1 28752269 28752277 PAX4 JASPAR yes 118262852
chr1 28752280 28752291 TBX20 JASPAR yes 27770067
chr1 28752280 28752291 TBX20 JASPAR yes 118262853
chr1 28752281 28752292 CEBPA JASPAR yes 27770068
chr1 28752281 28752292 CEBPA JASPAR yes 118262854
chr1 28752282 28752293 CEBPB JASPAR yes 27770069
chr1 28752282 28752293 CEBPB JASPAR yes 118262855
chr1 28752282 28752303 IRF1 JASPAR yes 27770070
chr1 28752282 28752303 IRF1 JASPAR yes 118262856
chr1 28752284 28752305 ZNF263 JASPAR yes 27770071
chr1 28752284 28752305 ZNF263 JASPAR yes 118262857
chr1 28752286 28752301 PRDM1 JASPAR yes 27770072
chr1 28752286 28752301 PRDM1 JASPAR yes 118262858
chr1 28752298 28752303 ETS2 TRANSFAC yes 27770073
chr1 28752298 28752303 ETS2 TRANSFAC yes 118262859
chr1 28752305 28752315 HESX1 JASPAR yes 27770074
chr1 28752305 28752315 RAX JASPAR yes 27770075
chr1 28752305 28752315 HESX1 JASPAR yes 118262860
chr1 28752305 28752315 RAX JASPAR yes 118262861
chr1 28752306 28752314 DLX6 JASPAR yes 27770076
chr1 28752306 28752314 MSX2 JASPAR yes 27770077
chr1 28752306 28752314 DLX6 JASPAR yes 118262862
chr1 28752306 28752314 MSX2 JASPAR yes 118262863
chr1 28752310 28752316 NFIC JASPAR yes 27770078
chr1 28752310 28752316 NFIC JASPAR yes 118262864
chr1 28752334 28752345 FOSL1 JASPAR yes 27770079
chr1 28752334 28752345 FOSL1 JASPAR yes 118262865
chr1 28752335 28752346 JUNB JASPAR yes 27770080
chr1 28752335 28752346 JUNB JASPAR yes 118262866
chr1 28752351 28752361 MAX JASPAR yes 27770081
chr1 28752351 28752361 MAX JASPAR yes 118262867
chr1 28752351 28752362 USF1 JASPAR yes 27770082
chr1 28752351 28752362 USF2 JASPAR yes 27770083
chr1 28752351 28752362 USF1 JASPAR yes 118262868
chr1 28752351 28752362 USF2 JASPAR yes 118262869
chr1 28752352 28752362 TFEB JASPAR yes 27770084
chr1 28752352 28752362 TFEB JASPAR yes 118262870
chr1 28752388 28752393 H4TF1 TRANSFAC yes 27770085
chr1 28752388 28752393 H4TF1 TRANSFAC yes 118262871
chr1 28752428 28752433 ETS2 TRANSFAC yes 27770086
chr1 28752428 28752433 ETS2 TRANSFAC yes 118262872
chr1 28752433 28752445 PKNOX1 JASPAR yes 27770087
chr1 28752433 28752445 TGIF1 JASPAR yes 27770088
chr1 28752433 28752445 PKNOX1 JASPAR yes 118262873
chr1 28752433 28752445 TGIF1 JASPAR yes 118262874
SNP sites on vista1001[chr1:28752190-28752435]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 28752237 rs189848627 C T
IRF1
192540
Genes possibly regulated by vista1001[chr1:28752190-28752435]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 28655513 28662476 + MED18 ENSG00000130772.9 28655513 0.61 1.0 411 3323
chr1 28696114 28826881 + PHACTR4 ENSG00000204138.8 28696114 0.81 1.0 412 43924
chr1 28832455 28865812 + RCC1 ENSG00000180198.11 28832455 0.78 1.0 413 19980
Expression level of Genes
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miRNAs possibly regulated by vista1001[chr1:28752190-28752435]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results