EnhancerDB
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  3. vista1005[chr1:29101544-29101853]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1005[chr1:29101544-29101853]
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Tissue distribution of vista1005
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Transcription factor that possibly regulate vista1005[chr1:29101544-29101853]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 29101412 29102246 POLR2A UCSC Txn Factor no Conserved 107802664
chr1 29101552 29101562 PAX3 JASPAR yes 27784430
chr1 29101552 29101562 PAX7 JASPAR yes 27784431
chr1 29101552 29101562 PAX3 JASPAR yes 118263195
chr1 29101552 29101562 PAX7 JASPAR yes 118263196
chr1 29101578 29101596 ESR2 JASPAR yes 27784432
chr1 29101578 29101596 ESR2 JASPAR yes 118263197
chr1 29101586 29101592 SOX10 JASPAR yes 27784433
chr1 29101586 29101592 SOX10 JASPAR yes 118263198
chr1 29101611 29101627 ZNF143 JASPAR yes 27784434
chr1 29101611 29101627 ZNF143 JASPAR yes 118263199
chr1 29101619 29101628 THAP1 JASPAR yes 27784435
chr1 29101619 29101628 THAP1 JASPAR yes 118263200
chr1 29101622 29101626 LFA1 TRANSFAC yes 27784436
chr1 29101622 29101626 LFA1 TRANSFAC yes 118263201
chr1 29101622 29101634 NHLH1 JASPAR yes 27784437
chr1 29101622 29101634 NHLH1 JASPAR yes 118263202
chr1 29101623 29101633 MSC JASPAR yes 27784438
chr1 29101623 29101633 NHLH1 JASPAR yes 27784439
chr1 29101623 29101633 MSC JASPAR yes 118263203
chr1 29101623 29101633 NHLH1 JASPAR yes 118263204
chr1 29101671 29101681 HOXD13 JASPAR yes 27784440
chr1 29101671 29101681 HOXD13 JASPAR yes 118263205
chr1 29101671 29101682 HOXA10 JASPAR yes 27784441
chr1 29101671 29101682 HOXA10 JASPAR yes 118263206
chr1 29101672 29101682 ALX3 JASPAR yes 27784442
chr1 29101672 29101682 GSX1 JASPAR yes 27784443
chr1 29101672 29101682 GSX2 JASPAR yes 27784444
chr1 29101672 29101682 HOXB2 JASPAR yes 27784445
chr1 29101672 29101682 HOXB3 JASPAR yes 27784446
chr1 29101672 29101682 MEOX2 JASPAR yes 27784447
chr1 29101672 29101682 MIXL1 JASPAR yes 27784448
chr1 29101672 29101682 MNX1 JASPAR yes 27784449
chr1 29101672 29101682 ALX3 JASPAR yes 118263207
chr1 29101672 29101682 GSX1 JASPAR yes 118263208
chr1 29101672 29101682 GSX2 JASPAR yes 118263209
chr1 29101672 29101682 HOXB2 JASPAR yes 118263210
chr1 29101672 29101682 HOXB3 JASPAR yes 118263211
chr1 29101672 29101682 MEOX2 JASPAR yes 118263212
chr1 29101672 29101682 MIXL1 JASPAR yes 118263213
chr1 29101672 29101682 MNX1 JASPAR yes 118263214
chr1 29101673 29101681 LMX1A JASPAR yes 27784450
chr1 29101673 29101681 LMX1B JASPAR yes 27784451
chr1 29101673 29101681 NKX6-1 JASPAR yes 27784452
chr1 29101673 29101681 NKX6-2 JASPAR yes 27784453
chr1 29101673 29101681 PDX1 JASPAR yes 27784454
chr1 29101673 29101681 VAX1 JASPAR yes 27784455
chr1 29101673 29101681 VAX2 JASPAR yes 27784456
chr1 29101673 29101681 VSX1 JASPAR yes 27784457
chr1 29101673 29101681 LMX1A JASPAR yes 118263215
chr1 29101673 29101681 LMX1B JASPAR yes 118263216
chr1 29101673 29101681 NKX6-1 JASPAR yes 118263217
chr1 29101673 29101681 NKX6-2 JASPAR yes 118263218
chr1 29101673 29101681 PDX1 JASPAR yes 118263219
chr1 29101673 29101681 VAX1 JASPAR yes 118263220
chr1 29101673 29101681 VAX2 JASPAR yes 118263221
chr1 29101673 29101681 VSX1 JASPAR yes 118263222
chr1 29101693 29101703 HEY1 JASPAR yes 27784458
chr1 29101693 29101703 MAX JASPAR yes 27784459
chr1 29101693 29101703 MNT JASPAR yes 27784460
chr1 29101693 29101703 HEY1 JASPAR yes 118263223
chr1 29101693 29101703 MAX JASPAR yes 118263224
chr1 29101693 29101703 MNT JASPAR yes 118263225
chr1 29101695 29101700 MYC TRANSFAC yes 27784461
chr1 29101695 29101700 USF1 TRANSFAC yes 27784462
chr1 29101695 29101700 USF2 TRANSFAC yes 27784463
chr1 29101695 29101700 MYC TRANSFAC yes 118263226
chr1 29101695 29101700 USF1 TRANSFAC yes 118263227
chr1 29101695 29101700 USF2 TRANSFAC yes 118263228
chr1 29101695 29101702 USF1 JASPAR yes 27784464
chr1 29101695 29101702 USF1 JASPAR yes 118263229
chr1 29101700 29101705 ETS2 TRANSFAC yes 27784465
chr1 29101700 29101705 ETS2 TRANSFAC yes 118263230
chr1 29101761 29101765 H4TF2 TRANSFAC yes 27784466
chr1 29101761 29101765 H4TF2 TRANSFAC yes 118263231
chr1 29101767 29101772 SP1 TRANSFAC yes 27784467
chr1 29101767 29101772 SP1 TRANSFAC yes 118263232
chr1 29101792 29101804 ELF1 JASPAR yes 27784468
chr1 29101792 29101804 ELF1 JASPAR yes 118263233
chr1 29101792 29101807 STAT1 JASPAR yes 27784469
chr1 29101792 29101807 STAT1 JASPAR yes 118263234
chr1 29101794 29101800 ETS1 JASPAR yes 27784470
chr1 29101794 29101800 ETS1 JASPAR yes 118263235
chr1 29101794 29101804 ELK1 JASPAR yes 27784471
chr1 29101794 29101804 ELK1 JASPAR yes 118263236
chr1 29101818 29101829 TFAP2A JASPAR yes 27784472
chr1 29101818 29101829 TFAP2B JASPAR yes 27784473
chr1 29101818 29101829 TFAP2A JASPAR yes 118263237
chr1 29101818 29101829 TFAP2B JASPAR yes 118263238
chr1 29101818 29101830 TFAP2A JASPAR yes 27784474
chr1 29101818 29101830 TFAP2A JASPAR yes 118263239
chr1 29101826 29101831 SP1 TRANSFAC yes 27784475
chr1 29101826 29101831 SP1 TRANSFAC yes 118263240
chr1 29101826 29101833 SP1 TRANSFAC yes 27784476
chr1 29101826 29101833 SP1 TRANSFAC yes 118263241
chr1 29101826 29101835 SP1 TRANSFAC yes 27784477
chr1 29101826 29101835 SP1 TRANSFAC yes 118263242
chr1 29101849 29101859 HEY1 JASPAR yes 27784478
chr1 29101849 29101859 HEY2 JASPAR yes 27784479
chr1 29101849 29101859 HEY1 JASPAR yes 118263243
chr1 29101849 29101859 HEY2 JASPAR yes 118263244
chr1 29101849 29101860 NRF1 JASPAR yes 27784480
chr1 29101849 29101860 NRF1 JASPAR yes 118263245
chr1 29101850 29101861 NRF1 JASPAR yes 27784481
chr1 29101850 29101861 NRF1 JASPAR yes 118263246
SNP sites on vista1005[chr1:29101544-29101853]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 29101743 rs182654491 A G
POLR2A
194078
chr1 29101761 rs7513858 A C,G
H4TF2 POLR2A
194079
Genes possibly regulated by vista1005[chr1:29101544-29101853]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 29063133 29096287 + YTHDF2 ENSG00000198492.10 29063133 0.66 1.0 418 61589
chr1 29138654 29190208 + OPRD1 ENSG00000116329.6 29138654 0.98 0.83 419 63199
Expression level of Genes
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miRNAs possibly regulated by vista1005[chr1:29101544-29101853]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results