EnhancerDB
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  3. vista1017[chr1:29504261-29504387]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1017[chr1:29504261-29504387]
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Tissue distribution of vista1017
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Transcription factor that possibly regulate vista1017[chr1:29504261-29504387]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 29504258 29504269 CDX2 JASPAR yes 27805794
chr1 29504258 29504269 CDX2 JASPAR yes 118263734
chr1 29504259 29504270 HOXA10 JASPAR yes 27805795
chr1 29504259 29504270 HOXA10 JASPAR yes 118263735
chr1 29504260 29504269 CDX1 JASPAR yes 27805796
chr1 29504260 29504269 CDX1 JASPAR yes 118263736
chr1 29504260 29504270 HOXA13 JASPAR yes 27805797
chr1 29504260 29504270 HOXB13 JASPAR yes 27805798
chr1 29504260 29504270 HOXD13 JASPAR yes 27805799
chr1 29504260 29504270 HOXA13 JASPAR yes 118263737
chr1 29504260 29504270 HOXB13 JASPAR yes 118263738
chr1 29504260 29504270 HOXD13 JASPAR yes 118263739
chr1 29504290 29504301 TBX20 JASPAR yes 27805800
chr1 29504290 29504301 TBX2 JASPAR yes 27805801
chr1 29504290 29504301 TBX20 JASPAR yes 118263740
chr1 29504290 29504301 TBX2 JASPAR yes 118263741
chr1 29504292 29504300 TBX5 JASPAR yes 27805802
chr1 29504292 29504300 TBX5 JASPAR yes 118263742
chr1 29504319 29504323 H4TF2 TRANSFAC yes 27805803
chr1 29504319 29504323 H4TF2 TRANSFAC yes 118263743
chr1 29504340 29504356 SOX8 JASPAR yes 27805804
chr1 29504340 29504356 SOX8 JASPAR yes 118263744
chr1 29504350 29504364 TCF7L2 JASPAR yes 27805805
chr1 29504350 29504364 TCF7L2 JASPAR yes 118263745
chr1 29504365 29504369 YY1 TRANSFAC yes 27805806
chr1 29504365 29504369 YY1 TRANSFAC yes 118263746
chr1 29504367 29504379 FOXC2 JASPAR yes 27805807
chr1 29504367 29504379 FOXC2 JASPAR yes 118263747
chr1 29504369 29504387 SRF JASPAR yes 27805808
chr1 29504369 29504387 SRF JASPAR yes 118263748
chr1 29504371 29504387 SRF JASPAR yes 27805809
chr1 29504371 29504387 SRF JASPAR yes 118263749
chr1 29504371 29504389 SRF JASPAR yes 27805810
chr1 29504371 29504389 SRF JASPAR yes 118263750
chr1 29504372 29504377 ETS2 TRANSFAC yes 27805811
chr1 29504372 29504377 ETS2 TRANSFAC yes 118263751
chr1 29504372 29504384 SRF JASPAR yes 27805812
chr1 29504372 29504384 SRF JASPAR yes 118263752
chr1 29504374 29504386 SRF JASPAR yes 27805813
chr1 29504374 29504386 SRF JASPAR yes 118263753
chr1 29504377 29504381 YY1 TRANSFAC yes 27805814
chr1 29504377 29504381 YY1 TRANSFAC yes 118263754
chr1 29504382 29504386 ESR1 TRANSFAC yes 27805815
chr1 29504382 29504386 ESR1 TRANSFAC yes 118263755
SNP sites on vista1017[chr1:29504261-29504387]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 29504326 rs115057273 T C no 196054
Genes possibly regulated by vista1017[chr1:29504261-29504387]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 29445940 29450447 - TMEM200B ENSG00000253304.1 29450447 0.93 1.0 421 46186
chr1 29474255 29508499 - SRSF4 ENSG00000116350.11 29508499 0.57 0.99 422 95888
chr1 29519385 29557454 - MECR ENSG00000116353.11 29557454 0.78 1.0 423 46933
chr1 29563028 29653325 + PTPRU ENSG00000060656.15 29563028 0.73 1.0 424 41359
Expression level of Genes
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miRNAs possibly regulated by vista1017[chr1:29504261-29504387]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results