EnhancerDB
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  3. vista1250[chr1:39508832-39509204]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1250[chr1:39508832-39509204]
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Tissue distribution of vista1250
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Transcription factor that possibly regulate vista1250[chr1:39508832-39509204]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 39508868 39508889 IRF1 JASPAR yes 28248197
chr1 39508868 39508889 IRF1 JASPAR yes 118274907
chr1 39508869 39508889 RREB1 JASPAR yes 28248198
chr1 39508869 39508889 RREB1 JASPAR yes 118274908
chr1 39508874 39508880 TCF4 TRANSFAC yes 28248199
chr1 39508874 39508880 TCF4 TRANSFAC yes 118274909
chr1 39508874 39508889 FOXP1 JASPAR yes 28248200
chr1 39508874 39508889 FOXP1 JASPAR yes 118274910
chr1 39508874 39508894 RREB1 JASPAR yes 28248201
chr1 39508874 39508894 RREB1 JASPAR yes 118274911
chr1 39508874 39508895 IRF1 JASPAR yes 28248202
chr1 39508874 39508895 IRF1 JASPAR yes 118274912
chr1 39508875 39508896 IRF1 JASPAR yes 28248203
chr1 39508875 39508896 IRF1 JASPAR yes 118274913
chr1 39508876 39508896 RREB1 JASPAR yes 28248204
chr1 39508876 39508896 RREB1 JASPAR yes 118274914
chr1 39508881 39508887 TCF4 TRANSFAC yes 28248205
chr1 39508881 39508887 TCF4 TRANSFAC yes 118274915
chr1 39508881 39508896 FOXP1 JASPAR yes 28248206
chr1 39508881 39508896 FOXP1 JASPAR yes 118274916
chr1 39508886 39508900 IRF7 JASPAR yes 28248207
chr1 39508886 39508900 IRF7 JASPAR yes 118274917
chr1 39508888 39508894 TCF4 TRANSFAC yes 28248208
chr1 39508888 39508894 TCF4 TRANSFAC yes 118274918
chr1 39508939 39508949 SREBF2 JASPAR yes 28248209
chr1 39508939 39508949 SREBF2 JASPAR yes 118274919
chr1 39508950 39508964 TLX1 JASPAR yes 28248210
chr1 39508950 39508964 TLX1 JASPAR yes 118274920
chr1 39508950 39508968 ESR2 JASPAR yes 28248211
chr1 39508950 39508968 ESR2 JASPAR yes 118274921
chr1 39508951 39508968 ESR1 JASPAR yes 28248212
chr1 39508951 39508968 ESR1 JASPAR yes 118274922
chr1 39508954 39508975 ZNF263 JASPAR yes 28248213
chr1 39508954 39508975 ZNF263 JASPAR yes 118274923
chr1 39508962 39508981 CTCF JASPAR yes 28248214
chr1 39508962 39508981 CTCF JASPAR yes 118274924
chr1 39508987 39509008 MAFG JASPAR yes 28248215
chr1 39508987 39509008 MAFG JASPAR yes 118274925
chr1 39509021 39509030 SNAI2 JASPAR yes 28248216
chr1 39509021 39509030 SNAI2 JASPAR yes 118274926
chr1 39509021 39509031 ID4 JASPAR yes 28248217
chr1 39509021 39509031 TCF3 JASPAR yes 28248218
chr1 39509021 39509031 TCF4 JASPAR yes 28248219
chr1 39509021 39509031 ID4 JASPAR yes 118274927
chr1 39509021 39509031 TCF3 JASPAR yes 118274928
chr1 39509021 39509031 TCF4 JASPAR yes 118274929
chr1 39509035 39509045 SP1 JASPAR yes 28248220
chr1 39509035 39509045 SP1 JASPAR yes 118274930
chr1 39509038 39509043 SP1 TRANSFAC yes 28248221
chr1 39509038 39509043 SP1 TRANSFAC yes 118274931
chr1 39509052 39509067 MEF2A JASPAR yes 28248222
chr1 39509052 39509067 MEF2A JASPAR yes 118274932
chr1 39509053 39509068 MEF2C JASPAR yes 28248223
chr1 39509053 39509068 MEF2C JASPAR yes 118274933
chr1 39509054 39509066 MEF2B JASPAR yes 28248224
chr1 39509054 39509066 MEF2D JASPAR yes 28248225
chr1 39509054 39509066 MEF2B JASPAR yes 118274934
chr1 39509054 39509066 MEF2D JASPAR yes 118274935
chr1 39509056 39509060 YY1 TRANSFAC yes 28248226
chr1 39509056 39509060 YY1 TRANSFAC yes 118274936
chr1 39509058 39509068 HOXA13 JASPAR yes 28248227
chr1 39509058 39509068 HOXB13 JASPAR yes 28248228
chr1 39509058 39509068 HOXD13 JASPAR yes 28248229
chr1 39509058 39509068 HOXA13 JASPAR yes 118274937
chr1 39509058 39509068 HOXB13 JASPAR yes 118274938
chr1 39509058 39509068 HOXD13 JASPAR yes 118274939
chr1 39509058 39509069 HOXA10 JASPAR yes 28248230
chr1 39509058 39509069 HOXA10 JASPAR yes 118274940
chr1 39509059 39509068 CDX1 JASPAR yes 28248231
chr1 39509059 39509068 CDX1 JASPAR yes 118274941
chr1 39509059 39509070 CDX2 JASPAR yes 28248232
chr1 39509059 39509070 CDX2 JASPAR yes 118274942
chr1 39509074 39509085 CEBPB JASPAR yes 28248233
chr1 39509074 39509085 CEBPB JASPAR yes 118274943
chr1 39509074 39509087 ATF4 JASPAR yes 28248234
chr1 39509074 39509087 ATF4 JASPAR yes 118274944
chr1 39509075 39509088 JUN JASPAR yes 28248235
chr1 39509075 39509088 JUN JASPAR yes 118274945
chr1 39509085 39509103 NR3C1 JASPAR yes 28248236
chr1 39509085 39509103 NR3C1 JASPAR yes 118274946
chr1 39509087 39509107 ESR1 JASPAR yes 28248237
chr1 39509087 39509107 ESR1 JASPAR yes 118274947
chr1 39509088 39509092 ESR1 TRANSFAC yes 28248238
chr1 39509088 39509092 ESR1 TRANSFAC yes 118274948
chr1 39509099 39509117 RARA JASPAR yes 28248239
chr1 39509099 39509117 RARA JASPAR yes 118274949
chr1 39509106 39509119 NR2F1 JASPAR yes 28248240
chr1 39509106 39509119 NR2F1 JASPAR yes 118274950
chr1 39509110 39509118 CREB1 JASPAR yes 28248241
chr1 39509110 39509118 CREB1 JASPAR yes 118274951
chr1 39509114 39509124 SREBF2 JASPAR yes 28248242
chr1 39509114 39509124 SREBF2 JASPAR yes 118274952
chr1 39509122 39509143 MAFG JASPAR yes 28248243
chr1 39509122 39509143 MAFG JASPAR yes 118274953
chr1 39509170 39509180 SP1 JASPAR yes 28248244
chr1 39509170 39509180 SP1 JASPAR yes 118274954
chr1 39509193 39509197 YY1 TRANSFAC yes 28248245
chr1 39509193 39509197 YY1 TRANSFAC yes 118274955
SNP sites on vista1250[chr1:39508832-39509204]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 39508929 rs11205603 A G no 246868
chr1 39508998 rs560100469 C G
MAFG
246869
chr1 39509034 rs4661004 C A no 246870
chr1 39509041 rs12067888 G A
SP1
246871
chr1 39509068 rs113433736 G C
CDX1 CDX2 HOXA10 HOXA13 HOXB13 HOXD13 MEF2C
246872
chr1 39509141 rs185627497 C T
MAFG
246873
chr1 39509173 rs188573401 C G,T
SP1
246874
Genes possibly regulated by vista1250[chr1:39508832-39509204]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 39456895 39471731 + AKIRIN1 ENSG00000174574.11 39456895 0.69 0.99 542 48063
chr1 39491990 39500308 + NDUFS5 ENSG00000168653.6 39491990 0.66 0.99 543 83158
chr1 39546988 39952849 + MACF1 ENSG00000127603.19 39546988 0.86 0.99 544 62216
Expression level of Genes
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miRNAs possibly regulated by vista1250[chr1:39508832-39509204]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results