EnhancerDB
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  3. vista1277[chr1:40295095-40295414]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1277[chr1:40295095-40295414]
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Tissue distribution of vista1277
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Transcription factor that possibly regulate vista1277[chr1:40295095-40295414]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 40295116 40295125 PITX3 JASPAR yes 28294529
chr1 40295116 40295125 PITX3 JASPAR yes 118276247
chr1 40295116 40295126 GSC2 JASPAR yes 28294530
chr1 40295116 40295126 GSC JASPAR yes 28294531
chr1 40295116 40295126 GSC2 JASPAR yes 118276248
chr1 40295116 40295126 GSC JASPAR yes 118276249
chr1 40295117 40295125 OTX2 JASPAR yes 28294532
chr1 40295117 40295125 OTX2 JASPAR yes 118276250
chr1 40295119 40295132 HSF2 JASPAR yes 28294533
chr1 40295119 40295132 HSF2 JASPAR yes 118276251
chr1 40295142 40295148 SOX10 JASPAR yes 28294534
chr1 40295142 40295148 SOX10 JASPAR yes 118276252
chr1 40295196 40295203 JUN TRANSFAC yes 28294535
chr1 40295196 40295203 SP1 TRANSFAC yes 28294536
chr1 40295196 40295203 JUN TRANSFAC yes 118276253
chr1 40295196 40295203 SP1 TRANSFAC yes 118276254
chr1 40295249 40295252 MYB TRANSFAC yes 28294537
chr1 40295249 40295252 MYB TRANSFAC yes 118276255
chr1 40295252 40295261 ZEB1 JASPAR yes 28294538
chr1 40295252 40295261 ZEB1 JASPAR yes 118276256
chr1 40295252 40295267 SCRT1 JASPAR yes 28294539
chr1 40295252 40295267 SCRT1 JASPAR yes 118276257
chr1 40295253 40295263 FIGLA JASPAR yes 28294540
chr1 40295253 40295263 TCF3 JASPAR yes 28294541
chr1 40295253 40295263 TCF4 JASPAR yes 28294542
chr1 40295253 40295263 FIGLA JASPAR yes 118276258
chr1 40295253 40295263 TCF3 JASPAR yes 118276259
chr1 40295253 40295263 TCF4 JASPAR yes 118276260
chr1 40295254 40295263 SNAI2 JASPAR yes 28294543
chr1 40295254 40295263 SNAI2 JASPAR yes 118276261
chr1 40295255 40295260 USF2 TRANSFAC yes 28294544
chr1 40295255 40295260 USF2 TRANSFAC yes 118276262
chr1 40295272 40295277 ETS2 TRANSFAC yes 28294545
chr1 40295272 40295277 ETS2 TRANSFAC yes 118276263
chr1 40295325 40295331 PEA3 TRANSFAC yes 28294546
chr1 40295325 40295331 PEA3 TRANSFAC yes 118276264
chr1 40295329 40295341 YY1 JASPAR yes 28294547
chr1 40295329 40295341 YY1 JASPAR yes 118276265
chr1 40295334 40295338 YY1 TRANSFAC yes 28294548
chr1 40295334 40295338 YY1 TRANSFAC yes 118276266
chr1 40295334 40295351 BCL6B JASPAR yes 28294549
chr1 40295334 40295351 BCL6B JASPAR yes 118276267
chr1 40295344 40295348 YY1 TRANSFAC yes 28294550
chr1 40295344 40295348 YY1 TRANSFAC yes 118276268
chr1 40295365 40295375 ALX3 JASPAR yes 28294551
chr1 40295365 40295375 EN2 JASPAR yes 28294552
chr1 40295365 40295375 ESX1 JASPAR yes 28294553
chr1 40295365 40295375 GBX1 JASPAR yes 28294554
chr1 40295365 40295375 GBX2 JASPAR yes 28294555
chr1 40295365 40295375 HESX1 JASPAR yes 28294556
chr1 40295365 40295375 LBX2 JASPAR yes 28294557
chr1 40295365 40295375 MIXL1 JASPAR yes 28294558
chr1 40295365 40295375 RAX JASPAR yes 28294559
chr1 40295365 40295375 ALX3 JASPAR yes 118276269
chr1 40295365 40295375 EN2 JASPAR yes 118276270
chr1 40295365 40295375 ESX1 JASPAR yes 118276271
chr1 40295365 40295375 GBX1 JASPAR yes 118276272
chr1 40295365 40295375 GBX2 JASPAR yes 118276273
chr1 40295365 40295375 HESX1 JASPAR yes 118276274
chr1 40295365 40295375 LBX2 JASPAR yes 118276275
chr1 40295365 40295375 MIXL1 JASPAR yes 118276276
chr1 40295365 40295375 RAX JASPAR yes 118276277
chr1 40295366 40295370 H1TF2 TRANSFAC yes 28294560
chr1 40295366 40295370 NFE TRANSFAC yes 28294561
chr1 40295366 40295370 SRF TRANSFAC yes 28294562
chr1 40295366 40295370 H1TF2 TRANSFAC yes 118276278
chr1 40295366 40295370 NFE TRANSFAC yes 118276279
chr1 40295366 40295370 SRF TRANSFAC yes 118276280
chr1 40295366 40295374 BARX1 JASPAR yes 28294563
chr1 40295366 40295374 BSX JASPAR yes 28294564
chr1 40295366 40295374 EN1 JASPAR yes 28294565
chr1 40295366 40295374 ISX JASPAR yes 28294566
chr1 40295366 40295374 LHX9 JASPAR yes 28294567
chr1 40295366 40295374 MSX1 JASPAR yes 28294568
chr1 40295366 40295374 MSX2 JASPAR yes 28294569
chr1 40295366 40295374 PRRX1 JASPAR yes 28294570
chr1 40295366 40295374 RAX2 JASPAR yes 28294571
chr1 40295366 40295374 SHOX JASPAR yes 28294572
chr1 40295366 40295374 BARX1 JASPAR yes 118276281
chr1 40295366 40295374 BSX JASPAR yes 118276282
chr1 40295366 40295374 EN1 JASPAR yes 118276283
chr1 40295366 40295374 ISX JASPAR yes 118276284
chr1 40295366 40295374 LHX9 JASPAR yes 118276285
chr1 40295366 40295374 MSX1 JASPAR yes 118276286
chr1 40295366 40295374 MSX2 JASPAR yes 118276287
chr1 40295366 40295374 PRRX1 JASPAR yes 118276288
chr1 40295366 40295374 RAX2 JASPAR yes 118276289
chr1 40295366 40295374 SHOX JASPAR yes 118276290
chr1 40295366 40295380 POU1F1 JASPAR yes 28294573
chr1 40295366 40295380 POU1F1 JASPAR yes 118276291
chr1 40295367 40295379 POU3F1 JASPAR yes 28294574
chr1 40295367 40295379 POU3F2 JASPAR yes 28294575
chr1 40295367 40295379 POU3F1 JASPAR yes 118276292
chr1 40295367 40295379 POU3F2 JASPAR yes 118276293
chr1 40295367 40295380 POU3F3 JASPAR yes 28294576
chr1 40295367 40295380 POU3F3 JASPAR yes 118276294
chr1 40295368 40295380 POU2F1 JASPAR yes 28294577
chr1 40295368 40295380 POU2F1 JASPAR yes 118276295
chr1 40295369 40295378 POU3F4 JASPAR yes 28294578
chr1 40295369 40295378 POU5F1B JASPAR yes 28294579
chr1 40295369 40295378 POU3F4 JASPAR yes 118276296
chr1 40295369 40295378 POU5F1B JASPAR yes 118276297
chr1 40295374 40295378 YY1 TRANSFAC yes 28294580
chr1 40295374 40295378 YY1 TRANSFAC yes 118276298
chr1 40295392 40295398 MYC TRANSFAC yes 28294581
chr1 40295392 40295398 MYC TRANSFAC yes 118276299
chr1 40295408 40295423 STAT2 JASPAR yes 28294582
chr1 40295408 40295423 STAT2 JASPAR yes 118276300
SNP sites on vista1277[chr1:40295095-40295414]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 40295184 rs189575477 G C no 251041
chr1 40295408 rs111329818 GA G
STAT2
251042
chr1 40295408 rs11589146 G A
STAT2
251043
Genes possibly regulated by vista1277[chr1:40295095-40295414]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 40222854 40254533 - BMP8B ENSG00000116985.6 40254533 0.81 1.0 552 59438
chr1 40235195 40237020 - OXCT2 ENSG00000198754.5 40237020 0.82 1.0 553 41925
chr1 40306723 40349183 - TRIT1 ENSG00000043514.11 40349183 0.61 0.99 554 46231
chr1 40361098 40367928 - MYCL ENSG00000116990.9 40367928 0.82 1.0 555 27486
Expression level of Genes
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miRNAs possibly regulated by vista1277[chr1:40295095-40295414]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr4 148703790 148703811 + hsa-miR-4799-3p MIMAT0019977 148653238 0.08510756610930341 0.887154 0.0 1272
Expression level of miRNAs
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