EnhancerDB
  1. Home
  2. Enhancers
  3. vista129[chr1:3620035-3620325]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista129[chr1:3620035-3620325]
Back to top
Tissue distribution of vista129
Back to top
Transcription factor that possibly regulate vista129[chr1:3620035-3620325]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 3620029 3620039 MYF6 JASPAR yes 26304449
chr1 3620029 3620039 MYF6 JASPAR yes 118219409
chr1 3620039 3620047 HOXA5 JASPAR yes 26304450
chr1 3620039 3620047 HOXA5 JASPAR yes 118219410
chr1 3620040 3620050 EMX1 JASPAR yes 26304451
chr1 3620040 3620050 EMX2 JASPAR yes 26304452
chr1 3620040 3620050 EN2 JASPAR yes 26304453
chr1 3620040 3620050 ESX1 JASPAR yes 26304454
chr1 3620040 3620050 EVX1 JASPAR yes 26304455
chr1 3620040 3620050 EVX2 JASPAR yes 26304456
chr1 3620040 3620050 GBX1 JASPAR yes 26304457
chr1 3620040 3620050 GBX2 JASPAR yes 26304458
chr1 3620040 3620050 GSX1 JASPAR yes 26304459
chr1 3620040 3620050 GSX2 JASPAR yes 26304460
chr1 3620040 3620050 HESX1 JASPAR yes 26304461
chr1 3620040 3620050 HOXA2 JASPAR yes 26304462
chr1 3620040 3620050 HOXB2 JASPAR yes 26304463
chr1 3620040 3620050 HOXB3 JASPAR yes 26304464
chr1 3620040 3620050 LBX2 JASPAR yes 26304465
chr1 3620040 3620050 LHX2 JASPAR yes 26304466
chr1 3620040 3620050 LHX6 JASPAR yes 26304467
chr1 3620040 3620050 MEOX1 JASPAR yes 26304468
chr1 3620040 3620050 MEOX2 JASPAR yes 26304469
chr1 3620040 3620050 MIXL1 JASPAR yes 26304470
chr1 3620040 3620050 NOTO JASPAR yes 26304471
chr1 3620040 3620050 POU6F1 JASPAR yes 26304472
chr1 3620040 3620050 EMX1 JASPAR yes 118219411
chr1 3620040 3620050 EMX2 JASPAR yes 118219412
chr1 3620040 3620050 EN2 JASPAR yes 118219413
chr1 3620040 3620050 ESX1 JASPAR yes 118219414
chr1 3620040 3620050 EVX1 JASPAR yes 118219415
chr1 3620040 3620050 EVX2 JASPAR yes 118219416
chr1 3620040 3620050 GBX1 JASPAR yes 118219417
chr1 3620040 3620050 GBX2 JASPAR yes 118219418
chr1 3620040 3620050 GSX1 JASPAR yes 118219419
chr1 3620040 3620050 GSX2 JASPAR yes 118219420
chr1 3620040 3620050 HESX1 JASPAR yes 118219421
chr1 3620040 3620050 HOXA2 JASPAR yes 118219422
chr1 3620040 3620050 HOXB2 JASPAR yes 118219423
chr1 3620040 3620050 HOXB3 JASPAR yes 118219424
chr1 3620040 3620050 LBX2 JASPAR yes 118219425
chr1 3620040 3620050 LHX2 JASPAR yes 118219426
chr1 3620040 3620050 LHX6 JASPAR yes 118219427
chr1 3620040 3620050 MEOX1 JASPAR yes 118219428
chr1 3620040 3620050 MEOX2 JASPAR yes 118219429
chr1 3620040 3620050 MIXL1 JASPAR yes 118219430
chr1 3620040 3620050 NOTO JASPAR yes 118219431
chr1 3620040 3620050 POU6F1 JASPAR yes 118219432
chr1 3620041 3620049 EN1 JASPAR yes 26304473
chr1 3620041 3620049 ISX JASPAR yes 26304474
chr1 3620041 3620049 LBX1 JASPAR yes 26304475
chr1 3620041 3620049 LHX9 JASPAR yes 26304476
chr1 3620041 3620049 PAX4 JASPAR yes 26304477
chr1 3620041 3620049 PDX1 JASPAR yes 26304478
chr1 3620041 3620049 PRRX1 JASPAR yes 26304479
chr1 3620041 3620049 RAX2 JASPAR yes 26304480
chr1 3620041 3620049 SHOX JASPAR yes 26304481
chr1 3620041 3620049 UNCX JASPAR yes 26304482
chr1 3620041 3620049 VAX1 JASPAR yes 26304483
chr1 3620041 3620049 VAX2 JASPAR yes 26304484
chr1 3620041 3620049 VSX1 JASPAR yes 26304485
chr1 3620041 3620049 VSX2 JASPAR yes 26304486
chr1 3620041 3620049 EN1 JASPAR yes 118219433
chr1 3620041 3620049 ISX JASPAR yes 118219434
chr1 3620041 3620049 LBX1 JASPAR yes 118219435
chr1 3620041 3620049 LHX9 JASPAR yes 118219436
chr1 3620041 3620049 PAX4 JASPAR yes 118219437
chr1 3620041 3620049 PDX1 JASPAR yes 118219438
chr1 3620041 3620049 PRRX1 JASPAR yes 118219439
chr1 3620041 3620049 RAX2 JASPAR yes 118219440
chr1 3620041 3620049 SHOX JASPAR yes 118219441
chr1 3620041 3620049 UNCX JASPAR yes 118219442
chr1 3620041 3620049 VAX1 JASPAR yes 118219443
chr1 3620041 3620049 VAX2 JASPAR yes 118219444
chr1 3620041 3620049 VSX1 JASPAR yes 118219445
chr1 3620041 3620049 VSX2 JASPAR yes 118219446
chr1 3620060 3620065 SP1 TRANSFAC yes 26304487
chr1 3620060 3620065 SP1 TRANSFAC yes 118219447
chr1 3620069 3620082 TFAP2A JASPAR yes 26304488
chr1 3620069 3620082 TFAP2B JASPAR yes 26304489
chr1 3620069 3620082 TFAP2C JASPAR yes 26304490
chr1 3620069 3620082 TFAP2A JASPAR yes 118219448
chr1 3620069 3620082 TFAP2B JASPAR yes 118219449
chr1 3620069 3620082 TFAP2C JASPAR yes 118219450
chr1 3620081 3620094 SMAD2 JASPAR yes 26304491
chr1 3620081 3620094 SMAD2 JASPAR yes 118219451
chr1 3620086 3620100 ZIC1 JASPAR yes 26304492
chr1 3620086 3620100 ZIC1 JASPAR yes 118219452
chr1 3620086 3620101 ZIC3 JASPAR yes 26304493
chr1 3620086 3620101 ZIC4 JASPAR yes 26304494
chr1 3620086 3620101 ZIC3 JASPAR yes 118219453
chr1 3620086 3620101 ZIC4 JASPAR yes 118219454
chr1 3620120 3620124 NFE TRANSFAC yes 26304495
chr1 3620120 3620124 NFE TRANSFAC yes 118219455
chr1 3620144 3620155 FOSL2 JASPAR yes 26304496
chr1 3620144 3620155 JUNB JASPAR yes 26304497
chr1 3620144 3620155 FOSL2 JASPAR yes 118219456
chr1 3620144 3620155 JUNB JASPAR yes 118219457
chr1 3620145 3620156 FOS JASPAR yes 26304498
chr1 3620145 3620156 JUND JASPAR yes 26304499
chr1 3620145 3620156 FOS JASPAR yes 118219458
chr1 3620145 3620156 JUND JASPAR yes 118219459
chr1 3620146 3620155 JDP2 JASPAR yes 26304500
chr1 3620146 3620155 JDP2 JASPAR yes 118219460
chr1 3620154 3620159 ETS2 TRANSFAC yes 26304501
chr1 3620154 3620159 ETS2 TRANSFAC yes 118219461
chr1 3620156 3620166 NFIA JASPAR yes 26304502
chr1 3620156 3620166 NFIA JASPAR yes 118219462
chr1 3620157 3620166 NFIX JASPAR yes 26304503
chr1 3620157 3620166 NFIX JASPAR yes 118219463
chr1 3620158 3620164 NFIC JASPAR yes 26304504
chr1 3620158 3620164 NFIC JASPAR yes 118219464
chr1 3620162 3620174 TEAD1 JASPAR yes 26304505
chr1 3620162 3620174 TEAD1 JASPAR yes 118219465
chr1 3620164 3620172 EHF JASPAR yes 26304506
chr1 3620164 3620172 EHF JASPAR yes 118219466
chr1 3620210 3620226 GLIS1 JASPAR yes 26304507
chr1 3620210 3620226 GLIS1 JASPAR yes 118219467
chr1 3620225 3620236 SPDEF JASPAR yes 26304508
chr1 3620225 3620236 SPDEF JASPAR yes 118219468
chr1 3620235 3620253 SRF JASPAR yes 26304509
chr1 3620235 3620253 SRF JASPAR yes 118219469
chr1 3620265 3620278 TFAP2A JASPAR yes 26304510
chr1 3620265 3620278 TFAP2A JASPAR yes 118219470
chr1 3620276 3620280 NFE TRANSFAC yes 26304511
chr1 3620276 3620280 NFE TRANSFAC yes 118219471
chr1 3620280 3620295 RFX5 JASPAR yes 26304512
chr1 3620280 3620295 RFX5 JASPAR yes 118219472
chr1 3620311 3620328 ESR1 JASPAR yes 26304513
chr1 3620311 3620328 ESR1 JASPAR yes 118219473
chr1 3620312 3620332 ESR1 JASPAR yes 26304514
chr1 3620312 3620332 ESR1 JASPAR yes 118219474
chr1 3620313 3620317 LFA1 TRANSFAC yes 26304515
chr1 3620313 3620317 LFA1 TRANSFAC yes 118219475
SNP sites on vista129[chr1:3620035-3620325]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 3620059 rs112929951 G A no 24869
chr1 3620074 rs549093592 G A
TFAP2A TFAP2B TFAP2C
24870
chr1 3620162 rs74045918 G A
NFIA NFIC NFIX TEAD1
24871
chr1 3620180 rs17379833 A T no 24872
chr1 3620273 rs536230038 C A
TFAP2A
24873
Genes possibly regulated by vista129[chr1:3620035-3620325]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 3406484 3528059 - MEGF6 ENSG00000162591.11 3528059 0.83 1.0 76 8024
chr1 3541566 3546691 + TPRG1L ENSG00000158109.10 3541566 0.55 1.0 77 21531
chr1 3547331 3569325 - WRAP73 ENSG00000116213.11 3569325 0.66 1.0 78 49290
chr1 3569084 3652765 + TP73 ENSG00000078900.10 3569084 0.97 1.0 79 49049
chr1 3668962 3688209 + CCDC27 ENSG00000162592.4 3668962 0.94 1.0 80 51363
chr1 3689352 3692546 + SMIM1 ENSG00000235169.3 3689352 0.87 0.99 81 30973
chr1 3696784 3713068 - LRRC47 ENSG00000130764.5 3713068 0.55 1.0 82 7257
Expression level of Genes
Back to top
miRNAs possibly regulated by vista129[chr1:3620035-3620325]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results