EnhancerDB
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  3. vista1300[chr1:41040458-41040672]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1300[chr1:41040458-41040672]
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Tissue distribution of vista1300
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Transcription factor that possibly regulate vista1300[chr1:41040458-41040672]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 41040447 41040458 FOXP2 JASPAR yes 28330869
chr1 41040447 41040458 FOXP2 JASPAR yes 118277356
chr1 41040452 41040462 MYF6 JASPAR yes 28330871
chr1 41040452 41040462 MYF6 JASPAR yes 118277357
chr1 41040454 41040459 MYC TRANSFAC yes 28330872
chr1 41040454 41040459 MYC TRANSFAC yes 118277358
chr1 41040460 41040474 XBP1 JASPAR yes 28330873
chr1 41040460 41040474 XBP1 JASPAR yes 118277359
chr1 41040461 41040470 JDP2 JASPAR yes 28330874
chr1 41040461 41040470 JDP2 JASPAR yes 118277360
chr1 41040461 41040475 CREB3 JASPAR yes 28330875
chr1 41040461 41040475 CREB3L1 JASPAR yes 28330876
chr1 41040461 41040475 CREB3 JASPAR yes 118277361
chr1 41040461 41040475 CREB3L1 JASPAR yes 118277362
chr1 41040463 41040479 ZNF143 JASPAR yes 28330877
chr1 41040463 41040479 ZNF143 JASPAR yes 118277363
chr1 41040473 41040479 SOX10 JASPAR yes 28330878
chr1 41040473 41040479 SOX10 JASPAR yes 118277364
chr1 41040489 41040503 STAT1 JASPAR yes 28330879
chr1 41040489 41040503 STAT1 JASPAR yes 118277365
chr1 41040490 41040502 IRF1 JASPAR yes 28330880
chr1 41040490 41040502 IRF1 JASPAR yes 118277366
chr1 41040496 41040501 H4TF1 TRANSFAC yes 28330881
chr1 41040496 41040501 H4TF1 TRANSFAC yes 118277367
chr1 41040501 41040505 NFE TRANSFAC yes 28330882
chr1 41040501 41040505 NFE TRANSFAC yes 118277368
chr1 41040504 41040516 E2F8 JASPAR yes 28330883
chr1 41040504 41040516 E2F8 JASPAR yes 118277369
chr1 41040507 41040512 SP1 TRANSFAC yes 28330884
chr1 41040507 41040512 SP1 TRANSFAC yes 118277370
chr1 41040534 41040540 MZF1 JASPAR yes 28330885
chr1 41040534 41040540 MZF1 JASPAR yes 118277371
chr1 41040545 41040555 SP1 JASPAR yes 28330886
chr1 41040545 41040555 SP1 JASPAR yes 118277372
chr1 41040545 41040566 ZNF263 JASPAR yes 28330887
chr1 41040545 41040566 ZNF263 JASPAR yes 118277373
chr1 41040546 41040553 CEBPA TRANSFAC yes 28330888
chr1 41040546 41040553 CEBPA TRANSFAC yes 118277374
chr1 41040550 41040566 ZNF143 JASPAR yes 28330889
chr1 41040550 41040566 ZNF143 JASPAR yes 118277375
chr1 41040551 41040556 SP1 TRANSFAC yes 28330890
chr1 41040551 41040556 SP1 TRANSFAC yes 118277376
chr1 41040555 41040569 GLIS3 JASPAR yes 28330891
chr1 41040555 41040569 GLIS3 JASPAR yes 118277377
chr1 41040558 41040563 SP1 TRANSFAC yes 28330892
chr1 41040558 41040563 SP1 TRANSFAC yes 118277378
chr1 41040560 41040578 NFYA JASPAR yes 28330893
chr1 41040560 41040578 NFYA JASPAR yes 118277379
chr1 41040563 41040579 NFYA JASPAR yes 28330894
chr1 41040563 41040579 NFYA JASPAR yes 118277380
chr1 41040563 41040581 RARA JASPAR yes 28330895
chr1 41040563 41040581 RARA JASPAR yes 118277381
chr1 41040566 41040579 DUXA JASPAR yes 28330896
chr1 41040566 41040579 DUXA JASPAR yes 118277382
chr1 41040566 41040581 NFYB JASPAR yes 28330897
chr1 41040566 41040581 NFYB JASPAR yes 118277383
chr1 41040567 41040578 DUX4 JASPAR yes 28330898
chr1 41040567 41040578 DUX4 JASPAR yes 118277384
chr1 41040568 41040573 NFY TRANSFAC yes 28330899
chr1 41040568 41040573 NFY TRANSFAC yes 118277385
chr1 41040581 41040585 LFA1 TRANSFAC yes 28330900
chr1 41040581 41040585 LFA1 TRANSFAC yes 118277386
chr1 41040586 41040591 H4TF1 TRANSFAC yes 28330901
chr1 41040586 41040591 H4TF1 TRANSFAC yes 118277387
chr1 41040626 41040638 TAL1 JASPAR yes 28330902
chr1 41040626 41040638 TAL1 JASPAR yes 118277388
chr1 41040655 41040669 SPI1 JASPAR yes 28330903
chr1 41040655 41040669 SPIC JASPAR yes 28330904
chr1 41040655 41040669 SPI1 JASPAR yes 118277389
chr1 41040655 41040669 SPIC JASPAR yes 118277390
chr1 41040657 41040678 ZNF263 JASPAR yes 28330905
chr1 41040657 41040678 ZNF263 JASPAR yes 118277391
chr1 41040658 41040679 IRF1 JASPAR yes 28330906
chr1 41040658 41040679 IRF1 JASPAR yes 118277392
chr1 41040659 41040680 ZNF263 JASPAR yes 28330907
chr1 41040659 41040680 ZNF263 JASPAR yes 118277393
chr1 41040660 41040675 PRDM1 JASPAR yes 28330908
chr1 41040660 41040675 PRDM1 JASPAR yes 118277394
chr1 41040660 41040681 ZNF263 JASPAR yes 28330909
chr1 41040660 41040681 ZNF263 JASPAR yes 118277395
chr1 41040666 41040687 ZNF263 JASPAR yes 28330910
chr1 41040666 41040687 ZNF263 JASPAR yes 118277396
chr1 41040671 41040684 ELF1 JASPAR yes 28330911
chr1 41040671 41040684 ELF1 JASPAR yes 118277397
SNP sites on vista1300[chr1:41040458-41040672]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 41040467 rs563139640 ACAT A
CREB3 CREB3L1 JDP2 XBP1 ZNF143
255330
chr1 41040470 rs1856872 T C
CREB3 CREB3L1 JDP2 XBP1 ZNF143
255331
chr1 41040485 rs531694393 TG T no 255332
chr1 41040509 rs149248724 C T
E2F8 SP1
255333
chr1 41040510 rs116255300 G A
E2F8 SP1
255334
chr1 41040636 rs115212742 G A
TAL1
255335
Genes possibly regulated by vista1300[chr1:41040458-41040672]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 40942887 40962015 + ZFP69 ENSG00000187815.5 40942887 0.69 0.86 565 2429
chr1 40974413 40982228 + EXO5 ENSG00000164002.7 40974413 0.66 0.86 566 33955
chr1 40997233 41013841 + ZNF684 ENSG00000117010.11 40997233 0.78 0.99 567 56775
chr1 41086351 41131329 - RIMS3 ENSG00000117016.5 41131329 0.77 0.99 568 9343
Expression level of Genes
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miRNAs possibly regulated by vista1300[chr1:41040458-41040672]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results