EnhancerDB
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  3. vista13334[chr12:49628278-49628526]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista13334[chr12:49628278-49628526]
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Tissue distribution of vista13334
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Transcription factor that possibly regulate vista13334[chr12:49628278-49628526]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr12 49626603 49628795 POLR2A UCSC Txn Factor no Conserved 108030035
chr12 49626603 49628795 POLR2A UCSC Txn Factor no Conserved 108030036
chr12 49628032 49629257 MYC UCSC Txn Factor no Conserved 108030126
chr12 49628122 49628574 MAX UCSC Txn Factor no Conserved 108030130
chr12 49628170 49628577 CTCF UCSC Txn Factor no Conserved 108030136
chr12 49628224 49628568 GABPA UCSC Txn Factor no Conserved 108030165
chr12 49628253 49628515 RAD21 UCSC Txn Factor no Conserved 108030181
chr12 49628259 49628569 RUNX3 UCSC Txn Factor no Conserved 108030185
chr12 49628272 49628572 EGR1 UCSC Txn Factor no Conserved 108030201
chr12 49628274 49629025 E2F1 UCSC Txn Factor no Conserved 108030204
chr12 49628278 49628558 ELF1 UCSC Txn Factor no Conserved 108030207
chr12 49628273 49628278 ETS2 TRANSFAC yes 82400195
chr12 49628273 49628278 ETS2 TRANSFAC yes 120767040
chr12 49628279 49628295 RFX5 JASPAR yes 82400196
chr12 49628279 49628295 RFX5 JASPAR yes 120767041
chr12 49628285 49628297 CREB1 JASPAR yes 82400197
chr12 49628285 49628297 CREB1 JASPAR yes 120767042
chr12 49628287 49628301 CREB3 JASPAR yes 82400198
chr12 49628287 49628301 CREB3 JASPAR yes 120767043
chr12 49628290 49628295 ATF1 TRANSFAC yes 82400199
chr12 49628290 49628295 ATF1 TRANSFAC yes 120767044
chr12 49628295 49628316 REST JASPAR yes 82400200
chr12 49628295 49628316 REST JASPAR yes 120767045
chr12 49628327 49628341 GLIS2 JASPAR yes 82400201
chr12 49628327 49628341 GLIS2 JASPAR yes 120767046
chr12 49628370 49628374 NFE TRANSFAC yes 82400202
chr12 49628370 49628374 NFE TRANSFAC yes 120767047
chr12 49628380 49628399 CTCF JASPAR yes 82400203
chr12 49628380 49628399 CTCF JASPAR yes 120767048
chr12 49628381 49628396 ZIC4 JASPAR yes 82400204
chr12 49628381 49628396 ZIC4 JASPAR yes 120767049
chr12 49628388 49628393 SP1 TRANSFAC yes 82400205
chr12 49628388 49628393 SP1 TRANSFAC yes 120767050
chr12 49628391 49628410 CTCF JASPAR yes 82400206
chr12 49628391 49628410 CTCF JASPAR yes 120767051
chr12 49628396 49628400 NFE TRANSFAC yes 82400207
chr12 49628396 49628400 NFE TRANSFAC yes 120767052
chr12 49628396 49628401 GATA1 TRANSFAC yes 82400208
chr12 49628396 49628401 GATA1 TRANSFAC yes 120767053
chr12 49628396 49628402 GATA3 JASPAR yes 82400209
chr12 49628396 49628402 GATA3 JASPAR yes 120767054
chr12 49628416 49628421 SP1 TRANSFAC yes 82400210
chr12 49628416 49628421 SP1 TRANSFAC yes 120767055
chr12 49628416 49628422 SP1 TRANSFAC yes 82400211
chr12 49628416 49628422 SP1 TRANSFAC yes 120767056
chr12 49628418 49628427 SP1 TRANSFAC yes 82400212
chr12 49628418 49628427 SP1 TRANSFAC yes 120767057
chr12 49628419 49628425 SP1 TRANSFAC yes 82400213
chr12 49628419 49628425 SP1 TRANSFAC yes 120767058
chr12 49628421 49628426 SP1 TRANSFAC yes 82400214
chr12 49628421 49628426 SP1 TRANSFAC yes 120767059
chr12 49628421 49628437 GLIS1 JASPAR yes 82400215
chr12 49628421 49628437 GLIS1 JASPAR yes 120767060
chr12 49628437 49628448 ELK4 JASPAR yes 82400216
chr12 49628437 49628448 FLI1 JASPAR yes 82400217
chr12 49628437 49628448 ELK4 JASPAR yes 120767061
chr12 49628437 49628448 FLI1 JASPAR yes 120767062
chr12 49628438 49628448 ELK1 JASPAR yes 82400218
chr12 49628438 49628448 ELK3 JASPAR yes 82400219
chr12 49628438 49628448 ETV5 JASPAR yes 82400220
chr12 49628438 49628448 ETV6 JASPAR yes 82400221
chr12 49628438 49628448 GABPA JASPAR yes 82400222
chr12 49628438 49628448 ELK1 JASPAR yes 120767063
chr12 49628438 49628448 ELK3 JASPAR yes 120767064
chr12 49628438 49628448 ETV5 JASPAR yes 120767065
chr12 49628438 49628448 ETV6 JASPAR yes 120767066
chr12 49628438 49628448 GABPA JASPAR yes 120767067
chr12 49628438 49628450 ELF4 JASPAR yes 82400223
chr12 49628438 49628450 ELF4 JASPAR yes 120767068
chr12 49628438 49628451 ELF1 JASPAR yes 82400224
chr12 49628438 49628451 ELF1 JASPAR yes 120767069
chr12 49628440 49628446 ETS1 JASPAR yes 82400225
chr12 49628440 49628446 SPI1 JASPAR yes 82400226
chr12 49628440 49628446 ETS1 JASPAR yes 120767070
chr12 49628440 49628446 SPI1 JASPAR yes 120767071
chr12 49628461 49628472 NRF1 JASPAR yes 82400227
chr12 49628461 49628472 NRF1 JASPAR yes 120767072
chr12 49628463 49628471 WT1 TRANSFAC yes 82400228
chr12 49628463 49628471 WT1 TRANSFAC yes 120767073
chr12 49628466 49628472 SP1 TRANSFAC yes 82400229
chr12 49628466 49628472 SP1 TRANSFAC yes 120767074
chr12 49628472 49628486 ZIC1 JASPAR yes 82400230
chr12 49628472 49628486 ZIC1 JASPAR yes 120767075
chr12 49628472 49628487 ZIC3 JASPAR yes 82400231
chr12 49628472 49628487 ZIC4 JASPAR yes 82400232
chr12 49628472 49628487 ZIC3 JASPAR yes 120767076
chr12 49628472 49628487 ZIC4 JASPAR yes 120767077
chr12 49628473 49628478 SP1 TRANSFAC yes 82400233
chr12 49628473 49628478 SP1 TRANSFAC yes 120767078
chr12 49628482 49628490 FOXO3 JASPAR yes 82400234
chr12 49628482 49628490 FOXO3 JASPAR yes 120767079
chr12 49628512 49628516 NFE TRANSFAC yes 82400235
chr12 49628512 49628516 NFE TRANSFAC yes 120767080
chr12 49628516 49628523 E2F1 TRANSFAC yes 82400236
chr12 49628516 49628523 E2F1 TRANSFAC yes 120767081
chr12 49628516 49628524 E2F1 JASPAR yes 82400237
chr12 49628516 49628524 E2F1 JASPAR yes 120767082
SNP sites on vista13334[chr12:49628278-49628526]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr12 49628305 rs561834484 A AGGGCCT
CTCF E2F1 EGR1 ELF1 GABPA MAX MYC POLR2A RAD21 REST RUNX3
2619806
chr12 49628346 rs147554036 G A
CTCF E2F1 EGR1 ELF1 GABPA MAX MYC POLR2A RAD21 RUNX3
2619807
chr12 49628392 rs372787259 C A
CTCF E2F1 EGR1 ELF1 GABPA MAX MYC POLR2A RAD21 RUNX3 SP1 ZIC4
2619808
Genes possibly regulated by vista13334[chr12:49628278-49628526]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr12 49578579 49583107 - TUBA1A ENSG00000167552.9 49583107 0.81 0.98 12024 54829
chr12 49582519 49667114 + TUBA1C ENSG00000167553.10 49582519 0.96 1.0 12025 54241
chr12 49687035 49692465 + PRPH ENSG00000135406.9 49687035 0.95 1.0 12026 41491
chr12 49717019 49725514 + TROAP ENSG00000135451.8 49717019 0.92 1.0 12027 11507
Expression level of Genes
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miRNAs possibly regulated by vista13334[chr12:49628278-49628526]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results