EnhancerDB
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  3. vista1508[chr1:48178329-48178566]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1508[chr1:48178329-48178566]
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Tissue distribution of vista1508
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Transcription factor that possibly regulate vista1508[chr1:48178329-48178566]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 48178400 48178420 RREB1 JASPAR yes 28702715
chr1 48178400 48178420 RREB1 JASPAR yes 118286819
chr1 48178402 48178422 RREB1 JASPAR yes 28702716
chr1 48178402 48178422 RREB1 JASPAR yes 118286820
chr1 48178405 48178411 HiNF-A TRANSFAC yes 28702717
chr1 48178405 48178411 HiNF-A TRANSFAC yes 118286821
chr1 48178406 48178426 RREB1 JASPAR yes 28702718
chr1 48178406 48178426 RREB1 JASPAR yes 118286822
chr1 48178408 48178428 RREB1 JASPAR yes 28702719
chr1 48178408 48178428 RREB1 JASPAR yes 118286823
chr1 48178410 48178430 RREB1 JASPAR yes 28702720
chr1 48178410 48178430 RREB1 JASPAR yes 118286824
chr1 48178414 48178430 ZNF143 JASPAR yes 28702721
chr1 48178414 48178430 ZNF143 JASPAR yes 118286825
chr1 48178418 48178429 FOXH1 JASPAR yes 28702722
chr1 48178418 48178429 FOXH1 JASPAR yes 118286826
chr1 48178437 48178452 RFX5 JASPAR yes 28702723
chr1 48178437 48178452 RFX5 JASPAR yes 118286827
chr1 48178443 48178447 ESR1 TRANSFAC yes 28702724
chr1 48178443 48178447 ESR1 TRANSFAC yes 118286828
chr1 48178454 48178460 MZF1 JASPAR yes 28702725
chr1 48178454 48178460 MZF1 JASPAR yes 118286829
chr1 48178494 48178508 GLIS2 JASPAR yes 28702726
chr1 48178494 48178508 GLIS3 JASPAR yes 28702727
chr1 48178494 48178508 ZIC1 JASPAR yes 28702728
chr1 48178494 48178508 GLIS2 JASPAR yes 118286830
chr1 48178494 48178508 GLIS3 JASPAR yes 118286831
chr1 48178494 48178508 ZIC1 JASPAR yes 118286832
chr1 48178494 48178509 ZIC3 JASPAR yes 28702729
chr1 48178494 48178509 ZIC4 JASPAR yes 28702730
chr1 48178494 48178509 ZIC3 JASPAR yes 118286833
chr1 48178494 48178509 ZIC4 JASPAR yes 118286834
chr1 48178495 48178506 E2F4 JASPAR yes 28702731
chr1 48178495 48178506 E2F4 JASPAR yes 118286835
chr1 48178525 48178535 HOXB2 JASPAR yes 28702732
chr1 48178525 48178535 HOXB3 JASPAR yes 28702733
chr1 48178525 48178535 MNX1 JASPAR yes 28702734
chr1 48178525 48178535 HOXB2 JASPAR yes 118286836
chr1 48178525 48178535 HOXB3 JASPAR yes 118286837
chr1 48178525 48178535 MNX1 JASPAR yes 118286838
chr1 48178526 48178534 LBX1 JASPAR yes 28702735
chr1 48178526 48178534 PDX1 JASPAR yes 28702736
chr1 48178526 48178534 VAX1 JASPAR yes 28702737
chr1 48178526 48178534 VAX2 JASPAR yes 28702738
chr1 48178526 48178534 VSX1 JASPAR yes 28702739
chr1 48178526 48178534 VSX2 JASPAR yes 28702740
chr1 48178526 48178534 LBX1 JASPAR yes 118286839
chr1 48178526 48178534 PDX1 JASPAR yes 118286840
chr1 48178526 48178534 VAX1 JASPAR yes 118286841
chr1 48178526 48178534 VAX2 JASPAR yes 118286842
chr1 48178526 48178534 VSX1 JASPAR yes 118286843
chr1 48178526 48178534 VSX2 JASPAR yes 118286844
chr1 48178537 48178540 MYB TRANSFAC yes 28702741
chr1 48178537 48178540 MYB TRANSFAC yes 118286845
chr1 48178540 48178544 YY1 TRANSFAC yes 28702742
chr1 48178540 48178544 YY1 TRANSFAC yes 118286846
chr1 48178559 48178563 YY1 TRANSFAC yes 118286847
chr1 48178562 48178565 MYB TRANSFAC yes 118286848
SNP sites on vista1508[chr1:48178329-48178566]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 48178503 rs115184429 G A
E2F4 GLIS2 GLIS3 ZIC1 ZIC3 ZIC4
293842
chr1 48178554 rs193204500 C A no 293843
Genes possibly regulated by vista1508[chr1:48178329-48178566]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 48226979 48227290 - FLJ00388 ENSG00000273395.1 48227290 0.99 0.0 675 51276
Expression level of Genes
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miRNAs possibly regulated by vista1508[chr1:48178329-48178566]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results