EnhancerDB
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  3. vista1562[chr1:51442122-51442408]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1562[chr1:51442122-51442408]
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Tissue distribution of vista1562
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Transcription factor that possibly regulate vista1562[chr1:51442122-51442408]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 51442071 51444377 POLR2A UCSC Txn Factor no Conserved 107803140
chr1 51442164 51442169 TFAP2A TRANSFAC yes 28821820
chr1 51442164 51442169 TFAP2A TRANSFAC yes 118288743
chr1 51442164 51442170 MZF1 JASPAR yes 28821821
chr1 51442164 51442170 MZF1 JASPAR yes 118288744
chr1 51442172 51442176 YY1 TRANSFAC yes 28821822
chr1 51442172 51442176 YY1 TRANSFAC yes 118288745
chr1 51442187 51442208 ZNF263 JASPAR yes 28821823
chr1 51442187 51442208 ZNF263 JASPAR yes 118288746
chr1 51442190 51442195 SP1 TRANSFAC yes 28821824
chr1 51442190 51442195 SP1 TRANSFAC yes 118288747
chr1 51442191 51442201 ZNF740 JASPAR yes 28821825
chr1 51442191 51442201 ZNF740 JASPAR yes 118288748
chr1 51442192 51442197 TFAP2A TRANSFAC yes 28821826
chr1 51442192 51442197 TFAP2A TRANSFAC yes 118288749
chr1 51442192 51442198 MZF1 JASPAR yes 28821827
chr1 51442192 51442198 MZF1 JASPAR yes 118288750
chr1 51442194 51442200 MAZ TRANSFAC yes 28821828
chr1 51442194 51442200 MAZ TRANSFAC yes 118288751
chr1 51442194 51442205 E2F6 JASPAR yes 28821829
chr1 51442194 51442205 E2F6 JASPAR yes 118288752
chr1 51442196 51442204 SP1 TRANSFAC yes 28821830
chr1 51442196 51442204 SP1 TRANSFAC yes 118288753
chr1 51442196 51442206 SP1 JASPAR yes 28821831
chr1 51442196 51442206 SP1 JASPAR yes 118288754
chr1 51442198 51442204 MAZ TRANSFAC yes 28821832
chr1 51442198 51442204 MAZ TRANSFAC yes 118288755
chr1 51442231 51442236 TFAP2A TRANSFAC yes 28821833
chr1 51442231 51442236 TFAP2A TRANSFAC yes 118288756
chr1 51442231 51442237 MZF1 JASPAR yes 28821834
chr1 51442231 51442237 MZF1 JASPAR yes 118288757
chr1 51442243 51442253 POU6F2 JASPAR yes 28821835
chr1 51442243 51442253 POU6F2 JASPAR yes 118288758
chr1 51442244 51442254 EMX1 JASPAR yes 28821836
chr1 51442244 51442254 EMX2 JASPAR yes 28821837
chr1 51442244 51442254 EN2 JASPAR yes 28821838
chr1 51442244 51442254 ESX1 JASPAR yes 28821839
chr1 51442244 51442254 GBX1 JASPAR yes 28821840
chr1 51442244 51442254 GBX2 JASPAR yes 28821841
chr1 51442244 51442254 GSX1 JASPAR yes 28821842
chr1 51442244 51442254 GSX2 JASPAR yes 28821843
chr1 51442244 51442254 HESX1 JASPAR yes 28821844
chr1 51442244 51442254 HOXA2 JASPAR yes 28821845
chr1 51442244 51442254 HOXB2 JASPAR yes 28821846
chr1 51442244 51442254 HOXB3 JASPAR yes 28821847
chr1 51442244 51442254 LBX2 JASPAR yes 28821848
chr1 51442244 51442254 LHX2 JASPAR yes 28821849
chr1 51442244 51442254 LHX6 JASPAR yes 28821850
chr1 51442244 51442254 MEOX1 JASPAR yes 28821851
chr1 51442244 51442254 MEOX2 JASPAR yes 28821852
chr1 51442244 51442254 MIXL1 JASPAR yes 28821853
chr1 51442244 51442254 MNX1 JASPAR yes 28821854
chr1 51442244 51442254 NOTO JASPAR yes 28821855
chr1 51442244 51442254 POU6F1 JASPAR yes 28821856
chr1 51442244 51442254 RAX JASPAR yes 28821857
chr1 51442244 51442254 EMX1 JASPAR yes 118288759
chr1 51442244 51442254 EMX2 JASPAR yes 118288760
chr1 51442244 51442254 EN2 JASPAR yes 118288761
chr1 51442244 51442254 ESX1 JASPAR yes 118288762
chr1 51442244 51442254 GBX1 JASPAR yes 118288763
chr1 51442244 51442254 GBX2 JASPAR yes 118288764
chr1 51442244 51442254 GSX1 JASPAR yes 118288765
chr1 51442244 51442254 GSX2 JASPAR yes 118288766
chr1 51442244 51442254 HESX1 JASPAR yes 118288767
chr1 51442244 51442254 HOXA2 JASPAR yes 118288768
chr1 51442244 51442254 HOXB2 JASPAR yes 118288769
chr1 51442244 51442254 HOXB3 JASPAR yes 118288770
chr1 51442244 51442254 LBX2 JASPAR yes 118288771
chr1 51442244 51442254 LHX2 JASPAR yes 118288772
chr1 51442244 51442254 LHX6 JASPAR yes 118288773
chr1 51442244 51442254 MEOX1 JASPAR yes 118288774
chr1 51442244 51442254 MEOX2 JASPAR yes 118288775
chr1 51442244 51442254 MIXL1 JASPAR yes 118288776
chr1 51442244 51442254 MNX1 JASPAR yes 118288777
chr1 51442244 51442254 NOTO JASPAR yes 118288778
chr1 51442244 51442254 POU6F1 JASPAR yes 118288779
chr1 51442244 51442254 RAX JASPAR yes 118288780
chr1 51442245 51442253 BSX JASPAR yes 28821858
chr1 51442245 51442253 DLX6 JASPAR yes 28821859
chr1 51442245 51442253 EN1 JASPAR yes 28821860
chr1 51442245 51442253 ISX JASPAR yes 28821861
chr1 51442245 51442253 LBX1 JASPAR yes 28821862
chr1 51442245 51442253 LHX9 JASPAR yes 28821863
chr1 51442245 51442253 LMX1A JASPAR yes 28821864
chr1 51442245 51442253 LMX1B JASPAR yes 28821865
chr1 51442245 51442253 NKX6-1 JASPAR yes 28821866
chr1 51442245 51442253 NKX6-2 JASPAR yes 28821867
chr1 51442245 51442253 PAX4 JASPAR yes 28821868
chr1 51442245 51442253 PDX1 JASPAR yes 28821869
chr1 51442245 51442253 PRRX1 JASPAR yes 28821870
chr1 51442245 51442253 RAX2 JASPAR yes 28821871
chr1 51442245 51442253 SHOX JASPAR yes 28821872
chr1 51442245 51442253 UNCX JASPAR yes 28821873
chr1 51442245 51442253 VAX1 JASPAR yes 28821874
chr1 51442245 51442253 VAX2 JASPAR yes 28821875
chr1 51442245 51442253 VSX1 JASPAR yes 28821876
chr1 51442245 51442253 VSX2 JASPAR yes 28821877
chr1 51442245 51442253 BSX JASPAR yes 118288781
chr1 51442245 51442253 DLX6 JASPAR yes 118288782
chr1 51442245 51442253 EN1 JASPAR yes 118288783
chr1 51442245 51442253 ISX JASPAR yes 118288784
chr1 51442245 51442253 LBX1 JASPAR yes 118288785
chr1 51442245 51442253 LHX9 JASPAR yes 118288786
chr1 51442245 51442253 LMX1A JASPAR yes 118288787
chr1 51442245 51442253 LMX1B JASPAR yes 118288788
chr1 51442245 51442253 NKX6-1 JASPAR yes 118288789
chr1 51442245 51442253 NKX6-2 JASPAR yes 118288790
chr1 51442245 51442253 PAX4 JASPAR yes 118288791
chr1 51442245 51442253 PDX1 JASPAR yes 118288792
chr1 51442245 51442253 PRRX1 JASPAR yes 118288793
chr1 51442245 51442253 RAX2 JASPAR yes 118288794
chr1 51442245 51442253 SHOX JASPAR yes 118288795
chr1 51442245 51442253 UNCX JASPAR yes 118288796
chr1 51442245 51442253 VAX1 JASPAR yes 118288797
chr1 51442245 51442253 VAX2 JASPAR yes 118288798
chr1 51442245 51442253 VSX1 JASPAR yes 118288799
chr1 51442245 51442253 VSX2 JASPAR yes 118288800
chr1 51442298 51442303 GATA2 JASPAR yes 28821878
chr1 51442298 51442303 GATA2 JASPAR yes 118288801
chr1 51442302 51442308 SOX10 JASPAR yes 28821879
chr1 51442302 51442308 SOX10 JASPAR yes 118288802
chr1 51442385 51442392 ETS1 TRANSFAC yes 28821880
chr1 51442385 51442392 ETS1 TRANSFAC yes 118288803
chr1 51442385 51442396 FLI1 JASPAR yes 28821881
chr1 51442385 51442396 FLI1 JASPAR yes 118288804
chr1 51442400 51442413 SMAD2 JASPAR yes 28821882
chr1 51442400 51442413 SMAD2 JASPAR yes 118288805
chr1 51442406 51442416 FIGLA JASPAR yes 28821883
chr1 51442406 51442416 ID4 JASPAR yes 28821884
chr1 51442406 51442416 TCF3 JASPAR yes 28821885
chr1 51442406 51442416 TCF4 JASPAR yes 28821886
chr1 51442406 51442416 FIGLA JASPAR yes 118288806
chr1 51442406 51442416 ID4 JASPAR yes 118288807
chr1 51442406 51442416 TCF3 JASPAR yes 118288808
chr1 51442406 51442416 TCF4 JASPAR yes 118288809
chr1 51442408 51442413 USF2 TRANSFAC yes 28821887
chr1 51442408 51442413 USF2 TRANSFAC yes 118288810
SNP sites on vista1562[chr1:51442122-51442408]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 51442137 rs72904801 A G
POLR2A
303542
chr1 51442268 rs141920173 C A
POLR2A
303543
chr1 51442270 rs146125971 C T
POLR2A
303544
Genes possibly regulated by vista1562[chr1:51442122-51442408]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 50905150 51425935 - FAF1 ENSG00000185104.15 51425935 0.6 1.0 684 83813
chr1 51426417 51440305 + CDKN2C ENSG00000123080.6 51426417 0.81 0.98 685 84295
Expression level of Genes
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miRNAs possibly regulated by vista1562[chr1:51442122-51442408]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 51525744 51525764 + hsa-miR-6500-3p MIMAT0025455 51435925 0.021906818883060782 0.0 0.0 42
Expression level of miRNAs
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