EnhancerDB
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  3. vista1589[chr1:52390204-52390438]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1589[chr1:52390204-52390438]
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Tissue distribution of vista1589
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Transcription factor that possibly regulate vista1589[chr1:52390204-52390438]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 52390204 52390214 NFIA JASPAR yes 28875738
chr1 52390204 52390214 NFIA JASPAR yes 118289988
chr1 52390206 52390212 NFIC JASPAR yes 28875739
chr1 52390206 52390212 NFIC JASPAR yes 118289989
chr1 52390231 52390236 GATA2 JASPAR yes 28875740
chr1 52390231 52390236 GATA2 JASPAR yes 118289990
chr1 52390250 52390260 NKX2-3 JASPAR yes 28875741
chr1 52390250 52390260 NKX2-3 JASPAR yes 118289991
chr1 52390251 52390260 NKX3-2 JASPAR yes 28875742
chr1 52390251 52390260 NKX3-2 JASPAR yes 118289992
chr1 52390262 52390273 BATF JASPAR yes 28875743
chr1 52390262 52390273 BATF JASPAR yes 118289993
chr1 52390264 52390275 FOSL1 JASPAR yes 28875744
chr1 52390264 52390275 FOSL1 JASPAR yes 118289994
chr1 52390266 52390273 JUN TRANSFAC yes 28875745
chr1 52390266 52390273 JUN TRANSFAC yes 118289995
chr1 52390268 52390283 ZIC3 JASPAR yes 28875746
chr1 52390268 52390283 ZIC4 JASPAR yes 28875747
chr1 52390268 52390283 ZIC3 JASPAR yes 118289996
chr1 52390268 52390283 ZIC4 JASPAR yes 118289997
chr1 52390269 52390283 GLIS2 JASPAR yes 28875748
chr1 52390269 52390283 ZIC1 JASPAR yes 28875749
chr1 52390269 52390283 GLIS2 JASPAR yes 118289998
chr1 52390269 52390283 ZIC1 JASPAR yes 118289999
chr1 52390277 52390282 SP1 TRANSFAC yes 28875750
chr1 52390277 52390282 SP1 TRANSFAC yes 118290000
chr1 52390306 52390312 NFIC JASPAR yes 28875751
chr1 52390306 52390312 NFIC JASPAR yes 118290001
chr1 52390325 52390329 NFE TRANSFAC yes 28875752
chr1 52390325 52390329 NFE TRANSFAC yes 118290002
chr1 52390343 52390353 TEAD4 JASPAR yes 28875753
chr1 52390343 52390353 TEAD4 JASPAR yes 118290003
chr1 52390344 52390352 TEAD3 JASPAR yes 28875754
chr1 52390344 52390352 TEAD3 JASPAR yes 118290004
chr1 52390357 52390368 JUNB JASPAR yes 28875755
chr1 52390357 52390368 JUNB JASPAR yes 118290005
chr1 52390359 52390366 JUN TRANSFAC yes 28875756
chr1 52390359 52390366 JUN TRANSFAC yes 118290006
chr1 52390382 52390392 SMAD3 JASPAR yes 28875757
chr1 52390382 52390392 SMAD3 JASPAR yes 118290007
chr1 52390420 52390423 MYB TRANSFAC yes 28875758
chr1 52390420 52390423 MYB TRANSFAC yes 118290008
chr1 52390422 52390442 RREB1 JASPAR yes 28875759
chr1 52390422 52390442 RREB1 JASPAR yes 118290009
chr1 52390423 52390443 RREB1 JASPAR yes 28875760
chr1 52390423 52390443 RREB1 JASPAR yes 118290010
chr1 52390433 52390443 SP1 JASPAR yes 28875761
chr1 52390433 52390443 SP1 JASPAR yes 118290011
SNP sites on vista1589[chr1:52390204-52390438]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 52390345 rs79603577 C T
TEAD3 TEAD4
308304
Genes possibly regulated by vista1589[chr1:52390204-52390438]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 52254863 52344477 - NRD1 ENSG00000078618.15 52344477 0.66 1.0 691 54273
chr1 52373628 52456436 - RAB3B ENSG00000169213.6 52456436 0.83 1.0 692 34002
Expression level of Genes
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miRNAs possibly regulated by vista1589[chr1:52390204-52390438]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results