EnhancerDB
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  3. vista1605[chr1:53369161-53369511]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1605[chr1:53369161-53369511]
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Tissue distribution of vista1605
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Transcription factor that possibly regulate vista1605[chr1:53369161-53369511]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 53369178 53369188 SREBF1 JASPAR yes 28907195
chr1 53369178 53369188 SREBF2 JASPAR yes 28907196
chr1 53369178 53369188 SREBF1 JASPAR yes 118290873
chr1 53369178 53369188 SREBF2 JASPAR yes 118290874
chr1 53369205 53369223 RARA JASPAR yes 28907197
chr1 53369205 53369223 RARA JASPAR yes 118290875
chr1 53369239 53369242 MYB TRANSFAC yes 28907198
chr1 53369239 53369242 MYB TRANSFAC yes 118290876
chr1 53369264 53369277 ZBTB18 JASPAR yes 28907199
chr1 53369264 53369277 ZBTB18 JASPAR yes 118290877
chr1 53369320 53369323 MYB TRANSFAC yes 28907200
chr1 53369320 53369323 MYB TRANSFAC yes 118290878
chr1 53369337 53369348 E2F1 JASPAR yes 28907201
chr1 53369337 53369348 E2F1 JASPAR yes 118290879
chr1 53369338 53369343 SP1 TRANSFAC yes 28907202
chr1 53369338 53369343 SP1 TRANSFAC yes 118290880
chr1 53369338 53369349 E2F4 JASPAR yes 28907203
chr1 53369338 53369349 E2F6 JASPAR yes 28907204
chr1 53369338 53369349 E2F4 JASPAR yes 118290881
chr1 53369338 53369349 E2F6 JASPAR yes 118290882
chr1 53369339 53369344 SP1 TRANSFAC yes 28907205
chr1 53369339 53369344 SP1 TRANSFAC yes 118290883
chr1 53369387 53369398 CEBPB JASPAR yes 28907206
chr1 53369387 53369398 CEBPB JASPAR yes 118290884
chr1 53369388 53369399 CEBPA JASPAR yes 28907207
chr1 53369388 53369399 CEBPA JASPAR yes 118290885
chr1 53369413 53369424 NFE2L2 JASPAR yes 28907208
chr1 53369413 53369424 NFE2L2 JASPAR yes 118290886
chr1 53369429 53369433 NFE TRANSFAC yes 28907209
chr1 53369429 53369433 NFE TRANSFAC yes 118290887
chr1 53369429 53369434 GATA1 TRANSFAC yes 28907210
chr1 53369429 53369434 GATA1 TRANSFAC yes 118290888
chr1 53369429 53369435 GATA3 JASPAR yes 28907211
chr1 53369429 53369435 GATA3 JASPAR yes 118290889
chr1 53369432 53369446 TCF7L2 JASPAR yes 28907212
chr1 53369432 53369446 TCF7L2 JASPAR yes 118290890
chr1 53369436 53369442 TCF1 TRANSFAC yes 28907213
chr1 53369436 53369442 TCF1 TRANSFAC yes 118290891
chr1 53369449 53369463 POU4F1 JASPAR yes 28907214
chr1 53369449 53369463 POU4F1 JASPAR yes 118290892
chr1 53369449 53369465 POU4F3 JASPAR yes 28907215
chr1 53369449 53369465 POU4F3 JASPAR yes 118290893
chr1 53369475 53369479 YY1 TRANSFAC yes 28907216
chr1 53369475 53369479 YY1 TRANSFAC yes 118290894
chr1 53369475 53369496 IRF1 JASPAR yes 28907217
chr1 53369475 53369496 IRF1 JASPAR yes 118290895
chr1 53369477 53369498 IRF1 JASPAR yes 28907218
chr1 53369477 53369498 IRF1 JASPAR yes 118290896
chr1 53369479 53369500 IRF1 JASPAR yes 28907219
chr1 53369479 53369500 IRF1 JASPAR yes 118290897
chr1 53369483 53369504 IRF1 JASPAR yes 28907220
chr1 53369483 53369504 IRF1 JASPAR yes 118290898
chr1 53369485 53369500 PRDM1 JASPAR yes 28907221
chr1 53369485 53369500 STAT2 JASPAR yes 28907222
chr1 53369485 53369500 PRDM1 JASPAR yes 118290899
chr1 53369485 53369500 STAT2 JASPAR yes 118290900
chr1 53369486 53369500 SPIC JASPAR yes 28907223
chr1 53369486 53369500 STAT1 JASPAR yes 28907224
chr1 53369486 53369500 SPIC JASPAR yes 118290901
chr1 53369486 53369500 STAT1 JASPAR yes 118290902
chr1 53369487 53369508 IRF1 JASPAR yes 28907225
chr1 53369487 53369508 IRF1 JASPAR yes 118290903
chr1 53369488 53369503 FOXP1 JASPAR yes 28907226
chr1 53369488 53369503 FOXP1 JASPAR yes 118290904
chr1 53369488 53369509 IRF1 JASPAR yes 28907227
chr1 53369488 53369509 IRF1 JASPAR yes 118290905
chr1 53369489 53369510 IRF1 JASPAR yes 28907228
chr1 53369489 53369510 IRF1 JASPAR yes 118290906
chr1 53369490 53369505 FOXP1 JASPAR yes 28907229
chr1 53369490 53369505 FOXP1 JASPAR yes 118290907
chr1 53369492 53369507 FOXP1 JASPAR yes 28907230
chr1 53369492 53369507 FOXP1 JASPAR yes 118290908
chr1 53369493 53369508 FOXP1 JASPAR yes 28907231
chr1 53369493 53369508 FOXP1 JASPAR yes 118290909
chr1 53369494 53369509 FOXP1 JASPAR yes 28907232
chr1 53369494 53369509 FOXP1 JASPAR yes 118290910
chr1 53369495 53369510 FOXP1 JASPAR yes 28907233
chr1 53369495 53369510 FOXP1 JASPAR yes 118290911
chr1 53369496 53369511 FOXP1 JASPAR yes 28907234
chr1 53369496 53369511 FOXP1 JASPAR yes 118290912
SNP sites on vista1605[chr1:53369161-53369511]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 53369183 rs184408235 C T
SREBF1 SREBF2
311462
chr1 53369225 rs376777600 A G no 311463
chr1 53369259 rs560751719 G C,T no 311464
chr1 53369295 rs115439701 G A no 311465
chr1 53369320 rs78625387 C A
MYB
311466
chr1 53369342 rs111953571 C T
E2F1 E2F4 E2F6 SP1
311467
chr1 53369423 rs34877649 C G,T
NFE2L2
311468
chr1 53369424 rs138910630 G A
NFE2L2
311469
chr1 53369481 rs115441370 C G
IRF1
311470
chr1 53369497 rs1263452 T C
FOXP1 IRF1 PRDM1 SPIC STAT1 STAT2
311471
Genes possibly regulated by vista1605[chr1:53369161-53369511]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 53308183 53360670 + ZYG11A ENSG00000203995.5 53308183 0.94 0.96 705 39022
chr1 53361656 53392884 - ECHDC2 ENSG00000121310.12 53392884 0.86 1.0 706 76627
chr1 53392901 53517375 + SCP2 ENSG00000116171.12 53392901 0.91 0.98 707 76610
Expression level of Genes
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miRNAs possibly regulated by vista1605[chr1:53369161-53369511]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results