EnhancerDB
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  3. vista1640[chr1:54700132-54700688]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1640[chr1:54700132-54700688]
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Tissue distribution of vista1640
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Transcription factor that possibly regulate vista1640[chr1:54700132-54700688]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54700154 54700169 RUNX2 JASPAR yes 118292141
chr1 54700163 54700168 SP1 TRANSFAC yes 118292142
chr1 54700167 54700173 PEA3 TRANSFAC yes 118292143
chr1 54700186 54700207 MAFG JASPAR yes 118292144
chr1 54700196 54700215 PAX5 JASPAR yes 118292145
chr1 54700199 54700216 PAX1 JASPAR yes 118292146
chr1 54700199 54700216 PAX9 JASPAR yes 118292147
chr1 54700216 54700227 NFE2L2 JASPAR yes 118292148
chr1 54700233 54700253 PPARG JASPAR yes 118292149
chr1 54700234 54700254 PPARG JASPAR yes 118292150
chr1 54700236 54700249 SMAD2 JASPAR yes 118292151
chr1 54700250 54700254 NFE TRANSFAC yes 118292152
chr1 54700250 54700255 GATA1 TRANSFAC yes 118292153
chr1 54700250 54700256 GATA3 JASPAR yes 118292154
chr1 54700255 54700263 FOXO3 JASPAR yes 118292155
chr1 54700262 54700274 FOXI1 JASPAR yes 118292156
chr1 54700266 54700278 FOXI1 JASPAR yes 118292157
chr1 54700270 54700282 FOXI1 JASPAR yes 118292158
chr1 54700279 54700290 PHOX2A JASPAR yes 118292159
chr1 54700279 54700290 PROP1 JASPAR yes 118292160
chr1 54700282 54700292 GSC2 JASPAR yes 118292161
chr1 54700283 54700291 OTX1 JASPAR yes 118292162
chr1 54700283 54700291 OTX2 JASPAR yes 118292163
chr1 54700283 54700292 PITX3 JASPAR yes 118292164
chr1 54700293 54700305 FOXI1 JASPAR yes 118292165
chr1 54700300 54700304 YY1 TRANSFAC yes 118292166
chr1 54700303 54700318 HNF1A JASPAR yes 118292167
chr1 54700305 54700317 HNF1B JASPAR yes 118292168
chr1 54700307 54700319 POU2F1 JASPAR yes 118292169
chr1 54700307 54700320 POU3F3 JASPAR yes 118292170
chr1 54700307 54700321 POU1F1 JASPAR yes 118292171
chr1 54700307 54700322 MEF2C JASPAR yes 118292172
chr1 54700308 54700319 FOXB1 JASPAR yes 118292173
chr1 54700308 54700320 POU3F1 JASPAR yes 118292174
chr1 54700308 54700321 POU3F3 JASPAR yes 118292175
chr1 54700309 54700313 YY1 TRANSFAC yes 118292176
chr1 54700309 54700318 POU5F1B JASPAR yes 118292177
chr1 54700309 54700320 FOXB1 JASPAR yes 118292178
chr1 54700309 54700321 POU2F1 JASPAR yes 118292179
chr1 54700310 54700319 POU5F1B JASPAR yes 118292180
chr1 54700312 54700326 POU4F1 JASPAR yes 118292181
chr1 54700312 54700328 POU4F2 JASPAR yes 118292182
chr1 54700312 54700328 POU4F3 JASPAR yes 118292183
chr1 54700317 54700323 TBP TRANSFAC yes 118292184
chr1 54700318 54700334 SOX8 JASPAR yes 118292185
chr1 54700319 54700334 SOX21 JASPAR yes 118292186
chr1 54700322 54700331 SRY JASPAR yes 118292187
chr1 54700324 54700327 MYB TRANSFAC yes 118292188
chr1 54700345 54700356 DMRT3 JASPAR yes 118292189
chr1 54700347 54700352 GATA2 JASPAR yes 118292190
chr1 54700352 54700356 YY1 TRANSFAC yes 118292191
chr1 54700354 54700372 NR3C1 JASPAR yes 118292192
chr1 54700355 54700370 AR JASPAR yes 118292193
chr1 54700355 54700372 NR3C1 JASPAR yes 118292194
chr1 54700355 54700372 NR3C2 JASPAR yes 118292195
chr1 54700384 54700399 HNF4A JASPAR yes 118292196
chr1 54700394 54700409 TFAP2A JASPAR yes 118292197
chr1 54700396 54700411 TFAP2C JASPAR yes 118292198
chr1 54700397 54700408 TFAP2A JASPAR yes 118292199
chr1 54700407 54700418 CDX2 JASPAR yes 118292200
chr1 54700433 54700437 TEAD2 TRANSFAC yes 118292201
chr1 54700433 54700438 TBP TRANSFAC yes 118292202
chr1 54700433 54700439 TFIID TRANSFAC yes 118292203
chr1 54700435 54700450 FOXP1 JASPAR yes 118292204
chr1 54700435 54700456 IRF1 JASPAR yes 118292205
chr1 54700436 54700451 FOXP1 JASPAR yes 118292206
chr1 54700436 54700457 IRF1 JASPAR yes 118292207
chr1 54700437 54700452 FOXP1 JASPAR yes 118292208
chr1 54700437 54700458 IRF1 JASPAR yes 118292209
chr1 54700438 54700453 FOXP1 JASPAR yes 118292210
chr1 54700439 54700454 FOXP1 JASPAR yes 118292211
chr1 54700439 54700460 IRF1 JASPAR yes 118292212
chr1 54700440 54700455 FOXP1 JASPAR yes 118292213
chr1 54700442 54700457 FOXP1 JASPAR yes 118292214
chr1 54700443 54700458 STAT2 JASPAR yes 118292215
chr1 54700466 54700477 NFE2L2 JASPAR yes 118292216
chr1 54700470 54700474 NFE TRANSFAC yes 118292217
chr1 54700541 54700552 E2F6 JASPAR yes 118292218
chr1 54700542 54700553 E2F1 JASPAR yes 118292219
chr1 54700545 54700559 PLAG1 JASPAR yes 118292220
chr1 54700656 54700660 YY1 TRANSFAC yes 118292221
chr1 54700669 54700684 FOXA1 JASPAR yes 118292222
chr1 54700670 54700685 FOXP1 JASPAR yes 118292223
chr1 54700671 54700682 FOXP2 JASPAR yes 118292224
chr1 54700671 54700683 FOXC2 JASPAR yes 118292225
chr1 54700673 54700684 FOXA1 JASPAR yes 118292226
chr1 54700673 54700684 FOXH1 JASPAR yes 118292227
chr1 54700679 54700685 TCF1 TRANSFAC yes 118292228
chr1 54700679 54700686 TCF4 TRANSFAC yes 118292229
SNP sites on vista1640[chr1:54700132-54700688]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54700161 rs144659746 T C
RUNX2
318380
chr1 54700223 rs531467751 C A
NFE2L2
318381
chr1 54700241 rs547858826 G A
PPARG SMAD2
318382
chr1 54700341 rs75192904 T G no 318383
chr1 54700355 rs151153394 T A
AR DMRT3 NR3C1 NR3C2 YY1
318384
chr1 54700364 rs571103687 T A
AR NR3C1 NR3C2
318385
chr1 54700365 rs539790241 C A,T
AR NR3C1 NR3C2
318386
chr1 54700436 rs688259 T A
FOXP1 IRF1 TBP TEAD2 TFIID
318387
chr1 54700489 rs556359689 T A no 318388
chr1 54700589 rs572485844 T C no 318389
chr1 54700633 rs558191724 C T no 318390
Genes possibly regulated by vista1640[chr1:54700132-54700688]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 54598747 54619443 - CDCP2 ENSG00000157211.10 54619443 0.91 0.98 725 19311
chr1 54606897 54665746 - RP11-446E24.4 ENSG00000256407.1 54665746 0.93 1.0 726 65614
chr1 54635333 54637997 - AL357673.1 ENSG00000248835.2 54637997 0.62 1.0 727 37865
chr1 54638009 54665709 - CYB5RL ENSG00000215883.5 54665709 0.71 0.99 728 65577
chr1 54649714 54691137 + MRPL37 ENSG00000116221.11 54649714 0.77 1.0 729 49582
chr1 54703710 54704736 + SSBP3-AS1 ENSG00000198711.4 54703710 0.82 0.95 731 96978
Expression level of Genes
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miRNAs possibly regulated by vista1640[chr1:54700132-54700688]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results