EnhancerDB
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  3. vista1660[chr1:54940444-54940824]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1660[chr1:54940444-54940824]
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Tissue distribution of vista1660
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Transcription factor that possibly regulate vista1660[chr1:54940444-54940824]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 54940466 54940475 TFAP2A JASPAR yes 28987640
chr1 54940466 54940475 TFAP2A JASPAR yes 118292954
chr1 54940492 54940504 NHLH1 JASPAR yes 28987641
chr1 54940492 54940504 NHLH1 JASPAR yes 118292955
chr1 54940502 54940507 SP1 TRANSFAC yes 28987642
chr1 54940502 54940507 SP1 TRANSFAC yes 118292956
chr1 54940504 54940518 TLX1 JASPAR yes 28987643
chr1 54940504 54940518 TLX1 JASPAR yes 118292957
chr1 54940506 54940518 INSM1 JASPAR yes 28987644
chr1 54940506 54940518 INSM1 JASPAR yes 118292958
chr1 54940511 54940516 SP1 TRANSFAC yes 28987645
chr1 54940511 54940516 SP1 TRANSFAC yes 118292959
chr1 54940525 54940536 NRF1 JASPAR yes 28987646
chr1 54940525 54940536 NRF1 JASPAR yes 118292960
chr1 54940529 54940544 ZIC3 JASPAR yes 28987647
chr1 54940529 54940544 ZIC3 JASPAR yes 118292961
chr1 54940532 54940543 E2F4 JASPAR yes 28987648
chr1 54940532 54940543 E2F4 JASPAR yes 118292962
chr1 54940533 54940538 SP1 TRANSFAC yes 28987649
chr1 54940533 54940538 SP1 TRANSFAC yes 118292963
chr1 54940533 54940539 SP1 TRANSFAC yes 28987650
chr1 54940533 54940539 SP1 TRANSFAC yes 118292964
chr1 54940538 54940548 SP1 JASPAR yes 28987651
chr1 54940538 54940548 SP1 JASPAR yes 118292965
chr1 54940553 54940565 INSM1 JASPAR yes 28987652
chr1 54940553 54940565 INSM1 JASPAR yes 118292966
chr1 54940558 54940563 SP1 TRANSFAC yes 28987653
chr1 54940558 54940563 SP1 TRANSFAC yes 118292967
chr1 54940563 54940582 RFX2 JASPAR yes 28987654
chr1 54940563 54940582 RFX2 JASPAR yes 118292968
chr1 54940567 54940583 RFX2 JASPAR yes 28987655
chr1 54940567 54940583 RFX3 JASPAR yes 28987656
chr1 54940567 54940583 RFX4 JASPAR yes 28987657
chr1 54940567 54940583 RFX5 JASPAR yes 28987658
chr1 54940567 54940583 RFX2 JASPAR yes 118292969
chr1 54940567 54940583 RFX3 JASPAR yes 118292970
chr1 54940567 54940583 RFX4 JASPAR yes 118292971
chr1 54940567 54940583 RFX5 JASPAR yes 118292972
chr1 54940575 54940580 TFAP2A TRANSFAC yes 28987659
chr1 54940575 54940580 TFAP2A TRANSFAC yes 118292973
chr1 54940575 54940581 MZF1 JASPAR yes 28987660
chr1 54940575 54940581 MZF1 JASPAR yes 118292974
chr1 54940575 54940596 ZNF263 JASPAR yes 28987661
chr1 54940575 54940596 ZNF263 JASPAR yes 118292975
chr1 54940576 54940586 SP1 JASPAR yes 28987662
chr1 54940576 54940586 SP1 JASPAR yes 118292976
chr1 54940582 54940592 SP1 JASPAR yes 28987663
chr1 54940582 54940592 SP1 JASPAR yes 118292977
chr1 54940585 54940590 SP1 TRANSFAC yes 28987664
chr1 54940585 54940590 SP1 TRANSFAC yes 118292978
chr1 54940588 54940595 SP1 TRANSFAC yes 28987665
chr1 54940588 54940595 SP1 TRANSFAC yes 118292979
chr1 54940589 54940600 E2F1 JASPAR yes 28987666
chr1 54940589 54940600 E2F1 JASPAR yes 118292980
chr1 54940590 54940595 SP1 TRANSFAC yes 28987667
chr1 54940590 54940595 SP1 TRANSFAC yes 118292981
chr1 54940598 54940607 SP1 TRANSFAC yes 28987668
chr1 54940598 54940607 SP1 TRANSFAC yes 118292982
chr1 54940599 54940605 SP1 TRANSFAC yes 28987669
chr1 54940599 54940605 SP1 TRANSFAC yes 118292983
chr1 54940601 54940606 SP1 TRANSFAC yes 28987670
chr1 54940601 54940606 SP1 TRANSFAC yes 118292984
chr1 54940603 54940614 NRF1 JASPAR yes 28987671
chr1 54940603 54940614 NRF1 JASPAR yes 118292985
chr1 54940614 54940635 ZNF263 JASPAR yes 28987672
chr1 54940614 54940635 ZNF263 JASPAR yes 118292986
chr1 54940619 54940628 SNAI2 JASPAR yes 28987673
chr1 54940619 54940628 SNAI2 JASPAR yes 118292987
chr1 54940626 54940631 SP1 TRANSFAC yes 28987674
chr1 54940626 54940631 SP1 TRANSFAC yes 118292988
chr1 54940636 54940657 ZNF263 JASPAR yes 28987675
chr1 54940636 54940657 ZNF263 JASPAR yes 118292989
chr1 54940646 54940655 SP1 TRANSFAC yes 28987676
chr1 54940646 54940655 SP1 TRANSFAC yes 118292990
chr1 54940646 54940656 SP1 JASPAR yes 28987677
chr1 54940646 54940656 SP1 JASPAR yes 118292991
chr1 54940646 54940667 ZNF263 JASPAR yes 28987678
chr1 54940646 54940667 ZNF263 JASPAR yes 118292992
chr1 54940648 54940654 MAZ TRANSFAC yes 28987679
chr1 54940648 54940654 MAZ TRANSFAC yes 118292993
chr1 54940652 54940657 SP1 TRANSFAC yes 28987680
chr1 54940652 54940657 SP1 TRANSFAC yes 118292994
chr1 54940652 54940659 SP1 TRANSFAC yes 28987681
chr1 54940652 54940659 SP1 TRANSFAC yes 118292995
chr1 54940652 54940666 PLAG1 JASPAR yes 28987682
chr1 54940652 54940666 PLAG1 JASPAR yes 118292996
chr1 54940653 54940663 ELK1 JASPAR yes 28987683
chr1 54940653 54940663 ELK1 JASPAR yes 118292997
chr1 54940655 54940665 ELK1 JASPAR yes 28987684
chr1 54940655 54940665 GABPA JASPAR yes 28987685
chr1 54940655 54940665 ELK1 JASPAR yes 118292998
chr1 54940655 54940665 GABPA JASPAR yes 118292999
chr1 54940655 54940666 ELK4 JASPAR yes 28987686
chr1 54940655 54940666 FLI1 JASPAR yes 28987687
chr1 54940655 54940666 ELK4 JASPAR yes 118293000
chr1 54940655 54940666 FLI1 JASPAR yes 118293001
chr1 54940657 54940663 ETS1 JASPAR yes 28987688
chr1 54940657 54940663 SPI1 JASPAR yes 28987689
chr1 54940657 54940663 ETS1 JASPAR yes 118293002
chr1 54940657 54940663 SPI1 JASPAR yes 118293003
chr1 54940662 54940667 SP1 TRANSFAC yes 28987690
chr1 54940662 54940667 SP1 TRANSFAC yes 118293004
chr1 54940665 54940674 TFAP2A JASPAR yes 28987691
chr1 54940665 54940674 TFAP2A JASPAR yes 118293005
chr1 54940683 54940694 TFAP2A JASPAR yes 28987692
chr1 54940683 54940694 TFAP2B JASPAR yes 28987693
chr1 54940683 54940694 TFAP2C JASPAR yes 28987694
chr1 54940683 54940694 TFAP2A JASPAR yes 118293006
chr1 54940683 54940694 TFAP2B JASPAR yes 118293007
chr1 54940683 54940694 TFAP2C JASPAR yes 118293008
chr1 54940684 54940693 TFAP2A JASPAR yes 28987695
chr1 54940684 54940693 TFAP2A JASPAR yes 118293009
chr1 54940764 54940769 SP1 TRANSFAC yes 28987696
chr1 54940764 54940769 SP1 TRANSFAC yes 118293010
chr1 54940767 54940772 SP1 TRANSFAC yes 28987697
chr1 54940767 54940772 SP1 TRANSFAC yes 118293011
chr1 54940773 54940790 RARA JASPAR yes 28987698
chr1 54940773 54940790 RARA JASPAR yes 118293012
chr1 54940783 54940788 SP1 TRANSFAC yes 28987699
chr1 54940783 54940788 SP1 TRANSFAC yes 118293013
chr1 54940784 54940804 ESR1 JASPAR yes 28987700
chr1 54940784 54940804 ESR1 JASPAR yes 118293014
SNP sites on vista1660[chr1:54940444-54940824]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 54940678 rs190461746 G A no 320962
chr1 54940689 rs553966700 C T
TFAP2A TFAP2B TFAP2C
320963
chr1 54940743 rs182561930 C T no 320964
chr1 54940744 rs557766053 G C no 320965
chr1 54940745 rs572798934 GGCCCGCCGCA G no 320966
chr1 54940746 rs199963045 GC G no 320967
chr1 54940746 rs770456828 GC G no 320968
Genes possibly regulated by vista1660[chr1:54940444-54940824]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 54691105 54879152 - SSBP3 ENSG00000157216.11 54879152 0.79 1.0 730 38708
chr1 55007930 55104865 + ACOT11 ENSG00000162390.13 55007930 0.84 1.0 732 32894
Expression level of Genes
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miRNAs possibly regulated by vista1660[chr1:54940444-54940824]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results