EnhancerDB
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  3. vista1671[chr1:55340144-55340359]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista1671[chr1:55340144-55340359]
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Tissue distribution of vista1671
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Transcription factor that possibly regulate vista1671[chr1:55340144-55340359]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 55340162 55340166 NFE TRANSFAC yes 118293593
chr1 55340163 55340168 GATA2 JASPAR yes 118293594
chr1 55340164 55340176 FOXI1 JASPAR yes 118293595
chr1 55340176 55340186 TBX21 JASPAR yes 118293596
chr1 55340176 55340187 TBX20 JASPAR yes 118293597
chr1 55340176 55340187 TBX2 JASPAR yes 118293598
chr1 55340176 55340189 EOMES JASPAR yes 118293599
chr1 55340177 55340185 MGA JASPAR yes 118293600
chr1 55340177 55340185 TBX1 JASPAR yes 118293601
chr1 55340177 55340187 TBR1 JASPAR yes 118293602
chr1 55340191 55340195 NFE TRANSFAC yes 118293603
chr1 55340191 55340196 GATA1 TRANSFAC yes 118293604
chr1 55340191 55340197 GATA3 JASPAR yes 118293605
chr1 55340204 55340216 DBP JASPAR yes 118293606
chr1 55340204 55340216 HLF JASPAR yes 118293607
chr1 55340206 55340217 NFIL3 JASPAR yes 118293608
chr1 55340206 55340217 PHOX2A JASPAR yes 118293609
chr1 55340224 55340238 MTF1 JASPAR yes 118293610
chr1 55340224 55340239 FOXA1 JASPAR yes 118293611
chr1 55340227 55340238 FOXC1 JASPAR yes 118293612
chr1 55340228 55340239 FOXA1 JASPAR yes 118293613
chr1 55340252 55340267 SCRT1 JASPAR yes 118293614
chr1 55340266 55340270 TEAD2 TRANSFAC yes 118293615
chr1 55340268 55340271 MYB TRANSFAC yes 118293616
chr1 55340273 55340278 GATA2 JASPAR yes 118293617
chr1 55340289 55340301 PKNOX1 JASPAR yes 118293618
chr1 55340289 55340301 PKNOX2 JASPAR yes 118293619
chr1 55340289 55340301 TGIF2 JASPAR yes 118293620
chr1 55340290 55340300 TFEB JASPAR yes 118293621
chr1 55340290 55340300 TFEC JASPAR yes 118293622
chr1 55340290 55340301 USF1 JASPAR yes 118293623
chr1 55340324 55340338 TCF7L2 JASPAR yes 118293624
chr1 55340327 55340333 LEF1 TRANSFAC yes 118293625
chr1 55340327 55340333 TCF4 TRANSFAC yes 118293626
chr1 55340331 55340340 NFIX JASPAR yes 118293627
chr1 55340333 55340339 NFIC JASPAR yes 118293628
chr1 55340343 55340354 FLI1 JASPAR yes 118293629
chr1 55340345 55340352 SPI1 JASPAR yes 118293630
chr1 55340345 55340353 EHF JASPAR yes 118293631
chr1 55340347 55340354 SPIB JASPAR yes 118293632
SNP sites on vista1671[chr1:55340144-55340359]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 55340168 rs545988839 C A
FOXI1 GATA2
322826
chr1 55340180 rs140236763 G A,T
EOMES MGA TBR1 TBX1 TBX2 TBX20 TBX21
322827
chr1 55340183 rs113493911 T G
EOMES MGA TBR1 TBX1 TBX2 TBX20 TBX21
322828
chr1 55340223 rs150322396 T C no 322829
chr1 55340262 rs137936687 T A
SCRT1
322830
chr1 55340288 rs189446332 T C no 322831
Genes possibly regulated by vista1671[chr1:55340144-55340359]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 55245385 55266940 - TTC22 ENSG00000006555.6 55266940 0.92 1.0 738 26796
chr1 55271736 55307925 + C1orf177 ENSG00000162398.7 55271736 0.98 1.0 739 31592
chr1 55315306 55352891 - DHCR24 ENSG00000116133.7 55352891 0.91 0.99 740 87468
Expression level of Genes
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miRNAs possibly regulated by vista1671[chr1:55340144-55340359]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results