EnhancerDB
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  3. vista22284[chr16:27541388-27541697]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista22284[chr16:27541388-27541697]
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Tissue distribution of vista22284
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Transcription factor that possibly regulate vista22284[chr16:27541388-27541697]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 27541401 27541411 MSC JASPAR yes 49361681
chr16 27541428 27541435 SPIB JASPAR yes 49361682
chr16 27541439 27541453 E2F7 JASPAR yes 49361683
chr16 27541444 27541457 SMAD2 JASPAR yes 49361684
chr16 27541463 27541478 RUNX2 JASPAR yes 49361685
chr16 27541490 27541501 RUNX1 JASPAR yes 49361686
chr16 27541491 27541501 RUNX3 JASPAR yes 49361687
chr16 27541511 27541514 MYB TRANSFAC yes 49361688
chr16 27541538 27541550 TAL1 JASPAR yes 49361689
chr16 27541539 27541551 BHLHE23 JASPAR yes 49361690
chr16 27541540 27541550 BHLHE22 JASPAR yes 49361691
chr16 27541540 27541550 NEUROD2 JASPAR yes 49361692
chr16 27541540 27541550 NEUROG2 JASPAR yes 49361693
chr16 27541540 27541550 OLIG1 JASPAR yes 49361694
chr16 27541540 27541550 OLIG2 JASPAR yes 49361695
chr16 27541540 27541550 OLIG3 JASPAR yes 49361696
chr16 27541540 27541552 TAL1 JASPAR yes 49361697
chr16 27541549 27541553 NFE TRANSFAC yes 49361698
chr16 27541553 27541562 SRY JASPAR yes 49361699
chr16 27541561 27541575 JUN JASPAR yes 49361700
chr16 27541563 27541574 BATF JASPAR yes 49361701
chr16 27541564 27541575 FOSL2 JASPAR yes 49361702
chr16 27541564 27541575 JUNB JASPAR yes 49361703
chr16 27541565 27541576 FOS JASPAR yes 49361704
chr16 27541565 27541576 FOSL1 JASPAR yes 49361705
chr16 27541565 27541576 JUND JASPAR yes 49361706
chr16 27541565 27541576 NFE2 JASPAR yes 49361707
chr16 27541566 27541575 JDP2 JASPAR yes 49361708
chr16 27541566 27541577 FOSL2 JASPAR yes 49361709
chr16 27541566 27541577 JUNB JASPAR yes 49361710
chr16 27541566 27541580 JUN JASPAR yes 49361711
chr16 27541571 27541583 BHLHE23 JASPAR yes 49361712
chr16 27541572 27541582 NEUROD2 JASPAR yes 49361713
chr16 27541572 27541582 OLIG1 JASPAR yes 49361714
chr16 27541572 27541582 OLIG2 JASPAR yes 49361715
chr16 27541572 27541582 OLIG3 JASPAR yes 49361716
chr16 27541585 27541591 TCF1 TRANSFAC yes 49361717
chr16 27541585 27541592 TCF4 TRANSFAC yes 49361718
chr16 27541610 27541614 YY1 TRANSFAC yes 49361719
chr16 27541614 27541625 HOXC11 JASPAR yes 49361720
chr16 27541615 27541625 HOXD11 JASPAR yes 49361721
chr16 27541640 27541651 HOXA10 JASPAR yes 49361722
chr16 27541640 27541651 HOXC11 JASPAR yes 49361723
chr16 27541640 27541651 HOXC12 JASPAR yes 49361724
chr16 27541640 27541651 HOXC13 JASPAR yes 49361725
chr16 27541640 27541651 HOXD12 JASPAR yes 49361726
chr16 27541641 27541650 CDX1 JASPAR yes 49361727
chr16 27541641 27541651 HOXA13 JASPAR yes 49361728
chr16 27541641 27541651 HOXC10 JASPAR yes 49361729
chr16 27541641 27541651 HOXD11 JASPAR yes 49361730
chr16 27541651 27541670 RFX2 JASPAR yes 49361731
chr16 27541656 27541666 NFATC3 JASPAR yes 49361732
chr16 27541665 27541677 PBX1 JASPAR yes 49361733
SNP sites on vista22284[chr16:27541388-27541697]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 27541440 rs75102029 T C
E2F7
4396620
chr16 27541493 rs180684925 G A
RUNX1 RUNX3
4396621
chr16 27541504 rs554023728 T G no 4396622
chr16 27541540 rs536509414 G A
BHLHE22 BHLHE23 NEUROD2 NEUROG2 OLIG1 OLIG2 OLIG3 TAL1
4396623
Genes possibly regulated by vista22284[chr16:27541388-27541697]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 27470876 27561234 - GTF3C1 ENSG00000077235.13 27561234 0.65 1.0 14670 80463
chr16 27561454 27791690 + KIAA0556 ENSG00000047578.8 27561454 0.78 1.0 14671 80243
Expression level of Genes
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miRNAs possibly regulated by vista22284[chr16:27541388-27541697]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results