EnhancerDB
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  3. vista23447[chr16:87812654-87813065]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23447[chr16:87812654-87813065]
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Tissue distribution of vista23447
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Transcription factor that possibly regulate vista23447[chr16:87812654-87813065]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 87812299 87813313 POLR2A UCSC Txn Factor no Conserved 108220147
chr16 87812617 87813105 TFAP2C UCSC Txn Factor no Conserved 108220167
chr16 87812624 87813332 EP300 UCSC Txn Factor no Conserved 108220169
chr16 87812627 87813094 MYC UCSC Txn Factor no Conserved 108220171
chr16 87812642 87813064 CTCF UCSC Txn Factor no Conserved 108220176
chr16 87812658 87813088 JUND UCSC Txn Factor no Conserved 108220186
chr16 87812670 87813277 TFAP2A UCSC Txn Factor no Conserved 108220195
chr16 87812671 87813068 CEBPB UCSC Txn Factor no Conserved 108220197
chr16 87812698 87813257 TCF12 UCSC Txn Factor no Conserved 108220222
chr16 87812705 87813021 ATF3 UCSC Txn Factor no Conserved 108220230
chr16 87812725 87813069 RUNX3 UCSC Txn Factor no Conserved 108220245
chr16 87812729 87813018 SMC3 UCSC Txn Factor no Conserved 108220252
chr16 87812732 87813020 RAD21 UCSC Txn Factor no Conserved 108220261
chr16 87812667 87812673 HiNF-A TRANSFAC yes 12238203
chr16 87812667 87812673 HiNF-A TRANSFAC yes 49414854
chr16 87812696 87812710 RXRB JASPAR yes 12238204
chr16 87812696 87812710 RXRB JASPAR yes 49414855
chr16 87812699 87812709 SP1 JASPAR yes 12238205
chr16 87812699 87812709 SP1 JASPAR yes 49414856
chr16 87812699 87812720 ZNF263 JASPAR yes 12238206
chr16 87812699 87812720 ZNF263 JASPAR yes 49414857
chr16 87812701 87812721 RREB1 JASPAR yes 12238207
chr16 87812701 87812721 RREB1 JASPAR yes 49414858
chr16 87812702 87812712 SREBF1 JASPAR yes 12238208
chr16 87812702 87812712 SREBF2 JASPAR yes 12238209
chr16 87812702 87812712 SREBF1 JASPAR yes 49414859
chr16 87812702 87812712 SREBF2 JASPAR yes 49414860
chr16 87812705 87812725 RREB1 JASPAR yes 12238210
chr16 87812705 87812725 RREB1 JASPAR yes 49414861
chr16 87812715 87812723 TBX5 JASPAR yes 12238211
chr16 87812715 87812723 TBX5 JASPAR yes 49414862
chr16 87812715 87812724 ZEB1 JASPAR yes 12238212
chr16 87812715 87812724 ZEB1 JASPAR yes 49414863
chr16 87812715 87812727 PKNOX1 JASPAR yes 12238213
chr16 87812715 87812727 PKNOX2 JASPAR yes 12238214
chr16 87812715 87812727 PKNOX1 JASPAR yes 49414864
chr16 87812715 87812727 PKNOX2 JASPAR yes 49414865
chr16 87812716 87812726 ID4 JASPAR yes 12238215
chr16 87812716 87812726 NHLH1 JASPAR yes 12238216
chr16 87812716 87812726 TCF3 JASPAR yes 12238217
chr16 87812716 87812726 TCF4 JASPAR yes 12238218
chr16 87812716 87812726 ID4 JASPAR yes 49414866
chr16 87812716 87812726 NHLH1 JASPAR yes 49414867
chr16 87812716 87812726 TCF3 JASPAR yes 49414868
chr16 87812716 87812726 TCF4 JASPAR yes 49414869
chr16 87812717 87812726 SNAI2 JASPAR yes 12238219
chr16 87812717 87812726 SNAI2 JASPAR yes 49414870
chr16 87812718 87812723 USF2 TRANSFAC yes 12238220
chr16 87812718 87812723 USF2 TRANSFAC yes 49414871
chr16 87812722 87812728 NFIC JASPAR yes 12238221
chr16 87812722 87812728 NFIC JASPAR yes 49414872
chr16 87812745 87812759 TLX1 JASPAR yes 12238222
chr16 87812745 87812759 TLX1 JASPAR yes 49414873
chr16 87812752 87812767 TFAP2A JASPAR yes 12238223
chr16 87812752 87812767 TFAP2C JASPAR yes 12238224
chr16 87812752 87812767 TFAP2A JASPAR yes 49414874
chr16 87812752 87812767 TFAP2C JASPAR yes 49414875
chr16 87812753 87812764 TFAP2A JASPAR yes 12238225
chr16 87812753 87812764 TFAP2B JASPAR yes 12238226
chr16 87812753 87812764 TFAP2C JASPAR yes 12238227
chr16 87812753 87812764 TFAP2A JASPAR yes 49414876
chr16 87812753 87812764 TFAP2B JASPAR yes 49414877
chr16 87812753 87812764 TFAP2C JASPAR yes 49414878
chr16 87812762 87812766 YY1 TRANSFAC yes 12238228
chr16 87812762 87812766 YY1 TRANSFAC yes 49414879
chr16 87812773 87812778 ETS2 TRANSFAC yes 12238229
chr16 87812773 87812778 ETS2 TRANSFAC yes 49414880
chr16 87812789 87812802 ATF4 JASPAR yes 12238230
chr16 87812789 87812802 ATF4 JASPAR yes 49414881
chr16 87812847 87812866 CTCF JASPAR yes 12238231
chr16 87812847 87812866 CTCF JASPAR yes 49414882
chr16 87812858 87812862 ESR1 TRANSFAC yes 12238232
chr16 87812858 87812862 ESR1 TRANSFAC yes 49414883
chr16 87812864 87812875 E2F4 JASPAR yes 12238233
chr16 87812864 87812875 E2F6 JASPAR yes 12238234
chr16 87812864 87812875 E2F4 JASPAR yes 49414884
chr16 87812864 87812875 E2F6 JASPAR yes 49414885
chr16 87812865 87812876 E2F1 JASPAR yes 12238235
chr16 87812865 87812876 E2F1 JASPAR yes 49414886
chr16 87812878 87812883 SP1 TRANSFAC yes 12238236
chr16 87812878 87812883 SP1 TRANSFAC yes 49414887
chr16 87812897 87812906 RUNX2 JASPAR yes 12238237
chr16 87812897 87812906 RUNX2 JASPAR yes 49414888
chr16 87812897 87812907 RUNX3 JASPAR yes 12238238
chr16 87812897 87812907 RUNX3 JASPAR yes 49414889
chr16 87812897 87812908 RUNX1 JASPAR yes 12238239
chr16 87812897 87812908 RUNX1 JASPAR yes 49414890
chr16 87812914 87812925 CEBPB JASPAR yes 12238240
chr16 87812914 87812925 CEBPB JASPAR yes 49414891
chr16 87812914 87812927 ATF4 JASPAR yes 12238241
chr16 87812914 87812927 ATF4 JASPAR yes 49414892
chr16 87812914 87812929 JUND JASPAR yes 12238242
chr16 87812914 87812929 JUND JASPAR yes 49414893
chr16 87812915 87812926 CEBPA JASPAR yes 12238243
chr16 87812915 87812926 CEBPA JASPAR yes 49414894
chr16 87812915 87812928 JUN JASPAR yes 12238244
chr16 87812915 87812928 JUN JASPAR yes 49414895
chr16 87812924 87812939 ZBTB33 JASPAR yes 12238245
chr16 87812924 87812939 ZBTB33 JASPAR yes 49414896
chr16 87812935 87812949 SPIC JASPAR yes 12238246
chr16 87812935 87812949 SPIC JASPAR yes 49414897
chr16 87812939 87812946 SPIB JASPAR yes 12238247
chr16 87812939 87812946 SPIB JASPAR yes 49414898
chr16 87812940 87812948 EHF JASPAR yes 12238248
chr16 87812940 87812948 EHF JASPAR yes 49414899
chr16 87812949 87812954 TFAP2A TRANSFAC yes 12238249
chr16 87812949 87812954 TFAP2A TRANSFAC yes 49414900
chr16 87812949 87812955 MZF1 JASPAR yes 12238250
chr16 87812949 87812955 MZF1 JASPAR yes 49414901
chr16 87812957 87812969 TFAP2A JASPAR yes 12238251
chr16 87812957 87812969 TFAP2B JASPAR yes 12238252
chr16 87812957 87812969 TFAP2C JASPAR yes 12238253
chr16 87812957 87812969 TFAP2A JASPAR yes 49414902
chr16 87812957 87812969 TFAP2B JASPAR yes 49414903
chr16 87812957 87812969 TFAP2C JASPAR yes 49414904
chr16 87812964 87812969 SP1 TRANSFAC yes 12238254
chr16 87812964 87812969 SP1 TRANSFAC yes 49414905
chr16 87812965 87812970 SP1 TRANSFAC yes 12238255
chr16 87812965 87812970 SP1 TRANSFAC yes 49414906
chr16 87812992 87812998 SOX10 JASPAR yes 12238256
chr16 87812992 87812998 SOX10 JASPAR yes 49414907
chr16 87812997 87813008 ESRRB JASPAR yes 12238257
chr16 87812997 87813008 ESRRB JASPAR yes 49414908
chr16 87812999 87813011 CREB1 JASPAR yes 12238258
chr16 87812999 87813011 CREB1 JASPAR yes 49414909
chr16 87813000 87813005 ATF1 TRANSFAC yes 12238259
chr16 87813000 87813005 ATF1 TRANSFAC yes 49414910
chr16 87813010 87813023 ZBTB18 JASPAR yes 12238260
chr16 87813010 87813023 ZBTB18 JASPAR yes 49414911
chr16 87813032 87813044 HINFP JASPAR yes 12238261
chr16 87813032 87813044 HINFP JASPAR yes 49414912
chr16 87813038 87813043 ATF1 TRANSFAC yes 12238262
chr16 87813038 87813043 ATF1 TRANSFAC yes 49414913
chr16 87813040 87813059 PAX5 JASPAR yes 12238263
chr16 87813040 87813059 PAX5 JASPAR yes 49414914
chr16 87813065 87813083 NFYA JASPAR yes 12238264
chr16 87813065 87813083 NFYA JASPAR yes 49414915
SNP sites on vista23447[chr16:87812654-87813065]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 87812655 rs78000578 G C
CTCF EP300 MYC POLR2A TFAP2C
4653886
chr16 87812853 rs531305549 G A
ATF3 CEBPB CTCF EP300 JUND MYC POLR2A RAD21 RUNX3 SMC3 TCF12 TFAP2A TFAP2C
4653887
chr16 87812864 rs6540077 C G
ATF3 CEBPB CTCF E2F4 E2F6 EP300 JUND MYC POLR2A RAD21 RUNX3 SMC3 TCF12 TFAP2A TFAP2C
4653888
chr16 87812949 rs372059827 A T
ATF3 CEBPB CTCF EP300 JUND MYC MZF1 POLR2A RAD21 RUNX3 SMC3 SPIC TCF12 TFAP2A TFAP2C
4653889
chr16 87813014 rs551275988 C G,T
ATF3 CEBPB CTCF EP300 JUND MYC POLR2A RAD21 RUNX3 SMC3 TCF12 TFAP2A TFAP2C ZBTB18
4653890
Genes possibly regulated by vista23447[chr16:87812654-87813065]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 87727144 87729753 - AC010536.1 ENSG00000226180.2 87729753 0.72 1.0 15147 17099
chr16 87730091 87799598 - KLHDC4 ENSG00000104731.9 87799598 0.72 1.0 15148 86944
chr16 87731749 87739290 - FLJ00104 ENSG00000205047.3 87739290 0.7 1.0 15149 26636
chr16 87863629 87903094 - SLC7A5 ENSG00000103257.4 87903094 0.95 1.0 15150 9971
Expression level of Genes
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miRNAs possibly regulated by vista23447[chr16:87812654-87813065]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr16 87868198 87868218 - hsa-miR-6775-3p MIMAT0027451 87903110 5.540411763402256e-05 0.0 0.0 638
Expression level of miRNAs
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