EnhancerDB
  1. Home
  2. Enhancers
  3. vista23460[chr16:87888208-87888468]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23460[chr16:87888208-87888468]
Back to top
Tissue distribution of vista23460
Back to top
Transcription factor that possibly regulate vista23460[chr16:87888208-87888468]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221259
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221260
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221261
chr16 87887177 87888359 EP300 UCSC Txn Factor no Conserved 108221271
chr16 87887799 87888520 GATA2 UCSC Txn Factor no Conserved 108221274
chr16 87887801 87888398 TEAD4 UCSC Txn Factor no Conserved 108221276
chr16 87887867 87888606 GATA1 UCSC Txn Factor no Conserved 108221278
chr16 87887995 87888451 JUND UCSC Txn Factor no Conserved 108221287
chr16 87888063 87888458 CCNT2 UCSC Txn Factor no Conserved 108221293
chr16 87888085 87888447 HMGN3 UCSC Txn Factor no Conserved 108221300
chr16 87888087 87888369 EGR1 UCSC Txn Factor no Conserved 108221303
chr16 87888123 87888373 NR2F2 UCSC Txn Factor no Conserved 108221312
chr16 87888130 87888404 TAL1 UCSC Txn Factor no Conserved 108221316
chr16 87888148 87888365 GABPA UCSC Txn Factor no Conserved 108221324
chr16 87888189 87888328 STAT5A UCSC Txn Factor no Conserved 108221334
chr16 87888200 87888211 FOS JASPAR yes 12247605
chr16 87888200 87888211 FOSL1 JASPAR yes 12247606
chr16 87888200 87888211 JUND JASPAR yes 12247607
chr16 87888200 87888211 FOS JASPAR yes 49415530
chr16 87888200 87888211 FOSL1 JASPAR yes 49415531
chr16 87888200 87888211 JUND JASPAR yes 49415532
chr16 87888202 87888209 JUN TRANSFAC yes 12247608
chr16 87888202 87888209 JUN TRANSFAC yes 49415533
chr16 87888220 87888231 FOXA1 JASPAR yes 12247609
chr16 87888220 87888231 FOXA1 JASPAR yes 49415534
chr16 87888250 87888262 GLI2 JASPAR yes 12247610
chr16 87888250 87888262 GLI2 JASPAR yes 49415535
chr16 87888265 87888276 TFAP2A JASPAR yes 12247611
chr16 87888265 87888276 TFAP2B JASPAR yes 12247612
chr16 87888265 87888276 TFAP2A JASPAR yes 49415536
chr16 87888265 87888276 TFAP2B JASPAR yes 49415537
chr16 87888265 87888277 TFAP2A JASPAR yes 12247613
chr16 87888265 87888277 TFAP2B JASPAR yes 12247614
chr16 87888265 87888277 TFAP2C JASPAR yes 12247615
chr16 87888265 87888277 TFAP2A JASPAR yes 49415538
chr16 87888265 87888277 TFAP2B JASPAR yes 49415539
chr16 87888265 87888277 TFAP2C JASPAR yes 49415540
chr16 87888275 87888285 TFAP4 JASPAR yes 12247616
chr16 87888275 87888285 TFAP4 JASPAR yes 49415541
chr16 87888288 87888302 GATA2 JASPAR yes 12247617
chr16 87888288 87888302 GATA2 JASPAR yes 49415542
chr16 87888290 87888298 GATA3 JASPAR yes 12247618
chr16 87888290 87888298 GATA3 JASPAR yes 49415543
chr16 87888304 87888317 NFKB1 JASPAR yes 12247619
chr16 87888304 87888317 NFKB2 JASPAR yes 12247620
chr16 87888304 87888317 NFKB1 JASPAR yes 49415544
chr16 87888304 87888317 NFKB2 JASPAR yes 49415545
chr16 87888306 87888316 NFKB1 JASPAR yes 12247621
chr16 87888306 87888316 NFKB1 JASPAR yes 49415546
chr16 87888307 87888312 GATA2 JASPAR yes 12247622
chr16 87888307 87888312 GATA2 JASPAR yes 49415547
chr16 87888308 87888322 ZIC1 JASPAR yes 12247623
chr16 87888308 87888322 ZIC1 JASPAR yes 49415548
chr16 87888308 87888323 ZIC3 JASPAR yes 12247624
chr16 87888308 87888323 ZIC3 JASPAR yes 49415549
chr16 87888318 87888336 TP73 JASPAR yes 12247625
chr16 87888318 87888336 TP73 JASPAR yes 49415550
chr16 87888331 87888346 NFYB JASPAR yes 12247626
chr16 87888331 87888346 NFYB JASPAR yes 49415551
chr16 87888333 87888338 NFY TRANSFAC yes 12247627
chr16 87888333 87888338 NFY TRANSFAC yes 49415552
chr16 87888335 87888341 NFIC JASPAR yes 12247628
chr16 87888335 87888341 NFIC JASPAR yes 49415553
chr16 87888336 87888350 TLX1 JASPAR yes 12247629
chr16 87888336 87888350 TLX1 JASPAR yes 49415554
chr16 87888340 87888346 GATA3 JASPAR yes 12247630
chr16 87888340 87888346 GATA3 JASPAR yes 49415555
chr16 87888346 87888363 ESR1 JASPAR yes 12247631
chr16 87888346 87888363 ESR1 JASPAR yes 49415556
chr16 87888347 87888367 ESR1 JASPAR yes 12247632
chr16 87888347 87888367 ESR1 JASPAR yes 49415557
chr16 87888348 87888352 LFA1 TRANSFAC yes 12247633
chr16 87888348 87888352 LFA1 TRANSFAC yes 49415558
chr16 87888363 87888368 SP1 TRANSFAC yes 12247634
chr16 87888363 87888368 SP1 TRANSFAC yes 49415559
chr16 87888367 87888373 SP1 TRANSFAC yes 12247635
chr16 87888367 87888373 SP1 TRANSFAC yes 49415560
chr16 87888367 87888377 SP1 JASPAR yes 12247636
chr16 87888367 87888377 SP1 JASPAR yes 49415561
chr16 87888371 87888390 REST JASPAR yes 12247637
chr16 87888371 87888390 REST JASPAR yes 49415562
chr16 87888386 87888390 NFE TRANSFAC yes 12247638
chr16 87888386 87888390 NFE TRANSFAC yes 49415563
chr16 87888386 87888407 ZNF263 JASPAR yes 12247639
chr16 87888386 87888407 ZNF263 JASPAR yes 49415564
chr16 87888393 87888403 SP1 JASPAR yes 12247640
chr16 87888393 87888403 SP1 JASPAR yes 49415565
chr16 87888398 87888417 PAX5 JASPAR yes 12247641
chr16 87888398 87888417 PAX5 JASPAR yes 49415566
chr16 87888399 87888408 ZEB1 JASPAR yes 12247642
chr16 87888399 87888408 ZEB1 JASPAR yes 49415567
chr16 87888402 87888407 USF2 TRANSFAC yes 12247643
chr16 87888402 87888407 USF2 TRANSFAC yes 49415568
chr16 87888405 87888418 SMAD2 JASPAR yes 12247644
chr16 87888405 87888418 SMAD2 JASPAR yes 49415569
chr16 87888405 87888419 TLX1 JASPAR yes 12247645
chr16 87888405 87888419 TLX1 JASPAR yes 49415570
chr16 87888409 87888422 SMAD2 JASPAR yes 12247646
chr16 87888409 87888422 SMAD2 JASPAR yes 49415571
chr16 87888414 87888422 TBX15 JASPAR yes 12247647
chr16 87888414 87888422 TBX15 JASPAR yes 49415572
chr16 87888414 87888423 ZEB1 JASPAR yes 12247648
chr16 87888414 87888423 ZEB1 JASPAR yes 49415573
chr16 87888415 87888425 TCF4 JASPAR yes 12247649
chr16 87888415 87888425 TCF4 JASPAR yes 49415574
chr16 87888417 87888422 USF2 TRANSFAC yes 12247650
chr16 87888417 87888422 USF2 TRANSFAC yes 49415575
chr16 87888420 87888434 TLX1 JASPAR yes 12247651
chr16 87888420 87888434 TLX1 JASPAR yes 49415576
chr16 87888452 87888466 PLAG1 JASPAR yes 12247652
chr16 87888452 87888466 PLAG1 JASPAR yes 49415577
chr16 87888455 87888467 TFAP2A JASPAR yes 12247653
chr16 87888455 87888467 TFAP2B JASPAR yes 12247654
chr16 87888455 87888467 TFAP2C JASPAR yes 12247655
chr16 87888455 87888467 TFAP2A JASPAR yes 49415578
chr16 87888455 87888467 TFAP2B JASPAR yes 49415579
chr16 87888455 87888467 TFAP2C JASPAR yes 49415580
chr16 87888455 87888468 TFAP2A JASPAR yes 12247656
chr16 87888455 87888468 TFAP2B JASPAR yes 12247657
chr16 87888455 87888468 TFAP2C JASPAR yes 12247658
chr16 87888455 87888468 TFAP2A JASPAR yes 49415581
chr16 87888455 87888468 TFAP2B JASPAR yes 49415582
chr16 87888455 87888468 TFAP2C JASPAR yes 49415583
chr16 87888455 87888470 TFAP2A JASPAR yes 12247659
chr16 87888455 87888470 TFAP2A JASPAR yes 49415584
chr16 87888463 87888467 LFA1 TRANSFAC yes 12247660
chr16 87888463 87888467 LFA1 TRANSFAC yes 49415585
SNP sites on vista23460[chr16:87888208-87888468]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 87888317 rs7194400 G A
CCNT2 EGR1 EP300 GABPA GATA1 GATA2 HMGN3 JUND NFKB1 NFKB2 NR2F2 POLR2A STAT5A TAL1 TEAD4 ZIC1 ZIC3
4655521
chr16 87888322 rs117322866 G A,C
CCNT2 EGR1 EP300 GABPA GATA1 GATA2 HMGN3 JUND NR2F2 POLR2A STAT5A TAL1 TEAD4 TP73 ZIC1 ZIC3
4655522
Genes possibly regulated by vista23460[chr16:87888208-87888468]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 87730091 87799598 - KLHDC4 ENSG00000104731.9 87799598 0.72 1.0 15148 11390
chr16 87863629 87903094 - SLC7A5 ENSG00000103257.4 87903094 0.95 1.0 15150 85374
chr16 87921625 87970135 - CA5A ENSG00000174990.3 87970135 1.0 1.0 15151 18333
chr16 87982850 88110924 + BANP ENSG00000172530.15 87982850 0.68 1.0 15152 5618
Expression level of Genes
Back to top
miRNAs possibly regulated by vista23460[chr16:87888208-87888468]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr16 87868198 87868218 - hsa-miR-6775-3p MIMAT0027451 87903110 0.00033859280828875193 0.0 0.0 638
Expression level of miRNAs
Back to top