EnhancerDB
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  3. vista23461[chr16:87889826-87890140]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23461[chr16:87889826-87890140]
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Tissue distribution of vista23461
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Transcription factor that possibly regulate vista23461[chr16:87889826-87890140]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221259
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221260
chr16 87883470 87890813 POLR2A UCSC Txn Factor no Conserved 108221261
chr16 87889822 87889830 MEIS2 JASPAR yes 12247877
chr16 87889822 87889830 MEIS3 JASPAR yes 12247878
chr16 87889822 87889830 MEIS2 JASPAR yes 49415586
chr16 87889822 87889830 MEIS3 JASPAR yes 49415587
chr16 87889835 87889842 E2F1 TRANSFAC yes 12247879
chr16 87889835 87889842 E2F1 TRANSFAC yes 49415588
chr16 87889853 87889872 REST JASPAR yes 12247880
chr16 87889853 87889872 REST JASPAR yes 49415589
chr16 87889856 87889860 NFE TRANSFAC yes 12247881
chr16 87889856 87889860 NFE TRANSFAC yes 49415590
chr16 87889868 87889872 H1TF2 TRANSFAC yes 12247882
chr16 87889868 87889872 NFE TRANSFAC yes 12247883
chr16 87889868 87889872 SRF TRANSFAC yes 12247884
chr16 87889868 87889872 H1TF2 TRANSFAC yes 49415591
chr16 87889868 87889872 NFE TRANSFAC yes 49415592
chr16 87889868 87889872 SRF TRANSFAC yes 49415593
chr16 87889883 87889887 LFA1 TRANSFAC yes 12247885
chr16 87889883 87889887 LFA1 TRANSFAC yes 49415594
chr16 87889893 87889897 H4TF2 TRANSFAC yes 12247886
chr16 87889893 87889897 H4TF2 TRANSFAC yes 49415595
chr16 87889921 87889934 POU3F3 JASPAR yes 12247887
chr16 87889921 87889934 POU3F3 JASPAR yes 49415596
chr16 87889921 87889935 POU1F1 JASPAR yes 12247888
chr16 87889921 87889935 POU1F1 JASPAR yes 49415597
chr16 87889922 87889934 POU3F2 JASPAR yes 12247889
chr16 87889922 87889934 POU3F2 JASPAR yes 49415598
chr16 87889922 87889935 POU2F2 JASPAR yes 12247890
chr16 87889922 87889935 POU2F2 JASPAR yes 49415599
chr16 87889934 87889943 SOX9 JASPAR yes 12247891
chr16 87889934 87889943 SOX9 JASPAR yes 49415600
chr16 87889934 87889949 FOXA1 JASPAR yes 12247892
chr16 87889934 87889949 FOXA1 JASPAR yes 49415601
chr16 87889935 87889950 FOXP1 JASPAR yes 12247893
chr16 87889935 87889950 FOXP1 JASPAR yes 49415602
chr16 87889936 87889945 SRY JASPAR yes 12247894
chr16 87889936 87889945 SRY JASPAR yes 49415603
chr16 87889936 87889947 FOXP2 JASPAR yes 12247895
chr16 87889936 87889947 FOXP2 JASPAR yes 49415604
chr16 87889936 87889948 FOXC2 JASPAR yes 12247896
chr16 87889936 87889948 FOXC2 JASPAR yes 49415605
chr16 87889936 87889950 FOXF2 JASPAR yes 12247897
chr16 87889936 87889950 FOXF2 JASPAR yes 49415606
chr16 87889937 87889945 FOXD1 JASPAR yes 12247898
chr16 87889937 87889945 FOXG1 JASPAR yes 12247899
chr16 87889937 87889945 FOXO3 JASPAR yes 12247900
chr16 87889937 87889945 FOXD1 JASPAR yes 49415607
chr16 87889937 87889945 FOXG1 JASPAR yes 49415608
chr16 87889937 87889945 FOXO3 JASPAR yes 49415609
chr16 87889937 87889948 FOXC1 JASPAR yes 12247901
chr16 87889937 87889948 FOXC1 JASPAR yes 49415610
chr16 87889938 87889945 FOXD2 JASPAR yes 12247902
chr16 87889938 87889945 FOXI1 JASPAR yes 12247903
chr16 87889938 87889945 FOXL1 JASPAR yes 12247904
chr16 87889938 87889945 FOXO4 JASPAR yes 12247905
chr16 87889938 87889945 FOXO6 JASPAR yes 12247906
chr16 87889938 87889945 FOXP3 JASPAR yes 12247907
chr16 87889938 87889945 FOXD2 JASPAR yes 49415611
chr16 87889938 87889945 FOXI1 JASPAR yes 49415612
chr16 87889938 87889945 FOXL1 JASPAR yes 49415613
chr16 87889938 87889945 FOXO4 JASPAR yes 49415614
chr16 87889938 87889945 FOXO6 JASPAR yes 49415615
chr16 87889938 87889945 FOXP3 JASPAR yes 49415616
chr16 87889938 87889946 FOXO3 JASPAR yes 12247908
chr16 87889938 87889946 FOXO3 JASPAR yes 49415617
chr16 87889938 87889949 FOXA1 JASPAR yes 12247909
chr16 87889938 87889949 FOXA1 JASPAR yes 49415618
chr16 87889968 87889981 ELF1 JASPAR yes 12247910
chr16 87889968 87889981 ELF1 JASPAR yes 49415619
chr16 87889971 87889978 SPIB JASPAR yes 12247911
chr16 87889971 87889978 SPIB JASPAR yes 49415620
chr16 87889971 87889981 ETV6 JASPAR yes 12247912
chr16 87889971 87889981 GABPA JASPAR yes 12247913
chr16 87889971 87889981 ETV6 JASPAR yes 49415621
chr16 87889971 87889981 GABPA JASPAR yes 49415622
chr16 87889971 87889982 ELK4 JASPAR yes 12247914
chr16 87889971 87889982 FLI1 JASPAR yes 12247915
chr16 87889971 87889982 ELK4 JASPAR yes 49415623
chr16 87889971 87889982 FLI1 JASPAR yes 49415624
chr16 87889972 87889980 EHF JASPAR yes 12247916
chr16 87889972 87889980 EHF JASPAR yes 49415625
chr16 87889973 87889980 SPI1 JASPAR yes 12247917
chr16 87889973 87889980 SPI1 JASPAR yes 49415626
chr16 87889995 87890010 STAT1 JASPAR yes 12247918
chr16 87889995 87890010 STAT1 JASPAR yes 49415627
chr16 87889997 87890008 STAT1 JASPAR yes 12247919
chr16 87889997 87890008 STAT3 JASPAR yes 12247920
chr16 87889997 87890008 STAT1 JASPAR yes 49415628
chr16 87889997 87890008 STAT3 JASPAR yes 49415629
chr16 87889997 87890010 ELF1 JASPAR yes 12247921
chr16 87889997 87890010 ELF1 JASPAR yes 49415630
chr16 87890000 87890007 ETS1 TRANSFAC yes 12247922
chr16 87890000 87890007 ETS1 TRANSFAC yes 49415631
chr16 87890019 87890034 TFAP2C JASPAR yes 12247923
chr16 87890019 87890034 TFAP2C JASPAR yes 49415632
chr16 87890020 87890024 H4TF2 TRANSFAC yes 12247924
chr16 87890020 87890024 H4TF2 TRANSFAC yes 49415633
chr16 87890022 87890033 EBF1 JASPAR yes 12247925
chr16 87890022 87890033 EBF1 JASPAR yes 49415634
chr16 87890038 87890042 LFA1 TRANSFAC yes 12247926
chr16 87890038 87890042 LFA1 TRANSFAC yes 49415635
chr16 87890042 87890061 REST JASPAR yes 12247927
chr16 87890042 87890061 REST JASPAR yes 49415636
chr16 87890056 87890061 SP1 TRANSFAC yes 12247928
chr16 87890056 87890061 SP1 TRANSFAC yes 49415637
chr16 87890056 87890063 SP1 TRANSFAC yes 12247929
chr16 87890056 87890063 SP1 TRANSFAC yes 49415638
chr16 87890074 87890089 RUNX2 JASPAR yes 12247930
chr16 87890074 87890089 RUNX2 JASPAR yes 49415639
chr16 87890076 87890091 RFX5 JASPAR yes 12247931
chr16 87890076 87890091 RFX5 JASPAR yes 49415640
chr16 87890098 87890117 REST JASPAR yes 12247932
chr16 87890098 87890117 REST JASPAR yes 49415641
chr16 87890106 87890110 LFA1 TRANSFAC yes 12247933
chr16 87890106 87890110 LFA1 TRANSFAC yes 49415642
chr16 87890114 87890134 TP63 JASPAR yes 12247934
chr16 87890114 87890134 TP63 JASPAR yes 49415643
chr16 87890119 87890139 TP63 JASPAR yes 12247935
chr16 87890119 87890139 TP63 JASPAR yes 49415644
chr16 87890133 87890138 SP1 TRANSFAC yes 12247936
chr16 87890133 87890138 SP1 TRANSFAC yes 49415645
SNP sites on vista23461[chr16:87889826-87890140]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 87889840 rs79998850 G A
E2F1 POLR2A
4655548
chr16 87889842 rs115248994 G A
E2F1 POLR2A
4655549
chr16 87889845 rs190523789 C G,T
POLR2A
4655550
chr16 87889860 rs9923936 T C
NFE POLR2A REST
4655551
chr16 87889942 rs113518174 T C
FOXA1 FOXC1 FOXC2 FOXD1 FOXD2 FOXF2 FOXG1 FOXI1 FOXL1 FOXO3 FOXO4 FOXO6 FOXP1 FOXP2 FOXP3 POLR2A SOX9 SRY
4655552
chr16 87889964 rs144979221 G A
POLR2A
4655553
chr16 87889985 rs149086654 G A
POLR2A
4655554
chr16 87890045 rs143708015 A G
POLR2A REST
4655555
chr16 87890118 rs138361297 C A
POLR2A TP63
4655556
Genes possibly regulated by vista23461[chr16:87889826-87890140]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 87730091 87799598 - KLHDC4 ENSG00000104731.9 87799598 0.72 1.0 15148 9772
chr16 87863629 87903094 - SLC7A5 ENSG00000103257.4 87903094 0.95 1.0 15150 87046
chr16 87921625 87970135 - CA5A ENSG00000174990.3 87970135 1.0 1.0 15151 20005
chr16 87982850 88110924 + BANP ENSG00000172530.15 87982850 0.68 1.0 15152 7290
Expression level of Genes
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miRNAs possibly regulated by vista23461[chr16:87889826-87890140]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr16 87868198 87868218 - hsa-miR-6775-3p MIMAT0027451 87903110 0.00038103947568968145 0.0 0.0 638
Expression level of miRNAs
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