EnhancerDB
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  3. vista23462[chr16:87892287-87892434]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23462[chr16:87892287-87892434]
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Tissue distribution of vista23462
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Transcription factor that possibly regulate vista23462[chr16:87892287-87892434]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 87891652 87892637 POLR2A UCSC Txn Factor no Conserved 108221434
chr16 87892277 87892287 NKX2-3 JASPAR yes 12248252
chr16 87892277 87892287 NKX2-3 JASPAR yes 49415646
chr16 87892278 87892287 NKX2-8 JASPAR yes 12248253
chr16 87892278 87892287 NKX2-8 JASPAR yes 49415647
chr16 87892287 87892297 REL JASPAR yes 12248254
chr16 87892287 87892297 REL JASPAR yes 49415648
chr16 87892287 87892298 NFKB1 JASPAR yes 12248255
chr16 87892287 87892298 NFKB1 JASPAR yes 49415649
chr16 87892304 87892312 MEIS2 JASPAR yes 12248256
chr16 87892304 87892312 MEIS3 JASPAR yes 12248257
chr16 87892304 87892312 MEIS2 JASPAR yes 49415650
chr16 87892304 87892312 MEIS3 JASPAR yes 49415651
chr16 87892305 87892309 NFE TRANSFAC yes 12248258
chr16 87892305 87892309 NFE TRANSFAC yes 49415652
chr16 87892305 87892312 MEIS1 JASPAR yes 12248259
chr16 87892305 87892312 MEIS1 JASPAR yes 49415653
chr16 87892316 87892331 HNF4A JASPAR yes 12248260
chr16 87892316 87892331 HNF4A JASPAR yes 49415654
chr16 87892332 87892346 TLX1 JASPAR yes 12248261
chr16 87892332 87892346 TLX1 JASPAR yes 49415655
chr16 87892332 87892349 BCL6B JASPAR yes 12248262
chr16 87892332 87892349 BCL6B JASPAR yes 49415656
chr16 87892370 87892384 SPI1 JASPAR yes 12248263
chr16 87892370 87892384 SPIC JASPAR yes 12248264
chr16 87892370 87892384 SPI1 JASPAR yes 49415657
chr16 87892370 87892384 SPIC JASPAR yes 49415658
chr16 87892372 87892384 EHF JASPAR yes 12248265
chr16 87892372 87892384 ELF4 JASPAR yes 12248266
chr16 87892372 87892384 EHF JASPAR yes 49415659
chr16 87892372 87892384 ELF4 JASPAR yes 49415660
chr16 87892373 87892384 ELF5 JASPAR yes 12248267
chr16 87892373 87892384 ETV2 JASPAR yes 12248268
chr16 87892373 87892384 ELF5 JASPAR yes 49415661
chr16 87892373 87892384 ETV2 JASPAR yes 49415662
chr16 87892374 87892384 ETS1 JASPAR yes 12248269
chr16 87892374 87892384 ETV1 JASPAR yes 12248270
chr16 87892374 87892384 ETV4 JASPAR yes 12248271
chr16 87892374 87892384 ETV5 JASPAR yes 12248272
chr16 87892374 87892384 ETV6 JASPAR yes 12248273
chr16 87892374 87892384 ETS1 JASPAR yes 49415663
chr16 87892374 87892384 ETV1 JASPAR yes 49415664
chr16 87892374 87892384 ETV4 JASPAR yes 49415665
chr16 87892374 87892384 ETV5 JASPAR yes 49415666
chr16 87892374 87892384 ETV6 JASPAR yes 49415667
chr16 87892376 87892382 ETS1 JASPAR yes 12248274
chr16 87892376 87892382 SPI1 JASPAR yes 12248275
chr16 87892376 87892382 ETS1 JASPAR yes 49415668
chr16 87892376 87892382 SPI1 JASPAR yes 49415669
chr16 87892391 87892406 SOX21 JASPAR yes 12248276
chr16 87892391 87892406 SOX21 JASPAR yes 49415670
chr16 87892391 87892407 SOX4 JASPAR yes 12248277
chr16 87892391 87892407 SOX4 JASPAR yes 49415671
chr16 87892426 87892436 HMBOX1 JASPAR yes 12248278
chr16 87892426 87892436 HMBOX1 JASPAR yes 49415672
chr16 87892428 87892431 MYB TRANSFAC yes 12248279
chr16 87892428 87892431 MYB TRANSFAC yes 49415673
SNP sites on vista23462[chr16:87892287-87892434]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 87892302 rs59237738 C T
POLR2A
4655594
chr16 87892323 rs185445665 C G
HNF4A POLR2A
4655595
chr16 87892329 rs189713312 C T
HNF4A POLR2A
4655596
chr16 87892378 rs573742855 G A
EHF ELF4 ELF5 ETS1 ETV1 ETV2 ETV4 ETV5 ETV6 POLR2A SPI1 SPIC
4655597
chr16 87892419 rs4369670 C T
POLR2A
4655598
Genes possibly regulated by vista23462[chr16:87892287-87892434]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 87730091 87799598 - KLHDC4 ENSG00000104731.9 87799598 0.72 1.0 15148 7311
chr16 87863629 87903094 - SLC7A5 ENSG00000103257.4 87903094 0.95 1.0 15150 89340
chr16 87921625 87970135 - CA5A ENSG00000174990.3 87970135 1.0 1.0 15151 22299
chr16 87982850 88110924 + BANP ENSG00000172530.15 87982850 0.68 1.0 15152 9584
Expression level of Genes
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miRNAs possibly regulated by vista23462[chr16:87892287-87892434]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr16 87868198 87868218 - hsa-miR-6775-3p MIMAT0027451 87903110 0.00046533271288971617 0.0 0.0 638
Expression level of miRNAs
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