EnhancerDB
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  3. vista23480[chr16:88082514-88082829]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23480[chr16:88082514-88082829]
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Tissue distribution of vista23480
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Transcription factor that possibly regulate vista23480[chr16:88082514-88082829]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 88082517 88082526 SNAI2 JASPAR yes 12259004
chr16 88082517 88082526 SNAI2 JASPAR yes 49416704
chr16 88082519 88082528 ZEB1 JASPAR yes 12259005
chr16 88082519 88082528 ZEB1 JASPAR yes 49416705
chr16 88082520 88082528 TBX5 JASPAR yes 12259006
chr16 88082520 88082528 TBX5 JASPAR yes 49416706
chr16 88082527 88082537 SP1 JASPAR yes 12259007
chr16 88082527 88082537 SP1 JASPAR yes 49416707
chr16 88082533 88082551 ESR1 JASPAR yes 12259008
chr16 88082533 88082551 ESR1 JASPAR yes 49416708
chr16 88082558 88082573 HNF4A JASPAR yes 12259009
chr16 88082558 88082573 HNF4A JASPAR yes 49416709
chr16 88082569 88082579 NFIA JASPAR yes 12259010
chr16 88082569 88082579 NFIA JASPAR yes 49416710
chr16 88082571 88082577 NFIC JASPAR yes 12259011
chr16 88082571 88082577 NFIC JASPAR yes 49416711
chr16 88082586 88082598 TAL1 JASPAR yes 12259012
chr16 88082586 88082598 TAL1 JASPAR yes 49416712
chr16 88082587 88082597 MAX JASPAR yes 12259013
chr16 88082587 88082597 MAX JASPAR yes 49416713
chr16 88082594 88082605 FOXA1 JASPAR yes 12259014
chr16 88082594 88082605 FOXA1 JASPAR yes 49416714
chr16 88082597 88082604 SPIB JASPAR yes 12259015
chr16 88082597 88082604 SPIB JASPAR yes 49416715
chr16 88082611 88082616 MYC TRANSFAC yes 12259016
chr16 88082611 88082616 MYC TRANSFAC yes 49416716
chr16 88082623 88082643 RREB1 JASPAR yes 12259017
chr16 88082623 88082643 RREB1 JASPAR yes 49416717
chr16 88082688 88082700 TAL1 JASPAR yes 12259018
chr16 88082688 88082700 TAL1 JASPAR yes 49416718
chr16 88082689 88082701 NHLH1 JASPAR yes 12259019
chr16 88082689 88082701 NHLH1 JASPAR yes 49416719
chr16 88082690 88082700 TFAP4 JASPAR yes 12259020
chr16 88082690 88082700 TFAP4 JASPAR yes 49416720
chr16 88082766 88082771 SP1 TRANSFAC yes 12259021
chr16 88082766 88082771 SP1 TRANSFAC yes 49416721
chr16 88082780 88082785 MYC TRANSFAC yes 12259022
chr16 88082780 88082785 MYC TRANSFAC yes 49416722
chr16 88082827 88082837 RELA JASPAR yes 12259023
chr16 88082827 88082837 RELA JASPAR yes 49416723
chr16 88082827 88082838 NFKB1 JASPAR yes 12259024
chr16 88082827 88082838 NFKB1 JASPAR yes 49416724
SNP sites on vista23480[chr16:88082514-88082829]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 88082568 rs28427460 G C,T
HNF4A
4657981
chr16 88082569 rs577912492 G A,C
HNF4A NFIA
4657982
chr16 88082595 rs12928626 T C
FOXA1 MAX TAL1
4657983
chr16 88082633 rs556894844 A G
RREB1
4657984
chr16 88082662 rs73250808 G T no 4657985
chr16 88082733 rs151166680 C T no 4657986
chr16 88082759 rs117523428 G A no 4657987
chr16 88082769 rs77671238 G A
SP1
4657988
chr16 88082783 rs530550713 G T
MYC
4657989
Genes possibly regulated by vista23480[chr16:88082514-88082829]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 87982850 88110924 + BANP ENSG00000172530.15 87982850 0.68 1.0 15152 336
Expression level of Genes
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miRNAs possibly regulated by vista23480[chr16:88082514-88082829]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr16 88535392 88535412 + hsa-miR-5189-3p MIMAT0027088 88519687 0.03042714003275082 0.916667 0.0 640
Expression level of miRNAs
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