EnhancerDB
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  3. vista23540[chr16:89050259-89050442]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista23540[chr16:89050259-89050442]
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Tissue distribution of vista23540
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Transcription factor that possibly regulate vista23540[chr16:89050259-89050442]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr16 89050109 89050551 RELA UCSC Txn Factor no Conserved 108224749
chr16 89050150 89050522 EBF1 UCSC Txn Factor no Conserved 108224750
chr16 89050263 89050277 STAT1 JASPAR yes 12313052
chr16 89050263 89050277 STAT1 JASPAR yes 49419878
chr16 89050263 89050278 STAT2 JASPAR yes 12313053
chr16 89050263 89050278 STAT2 JASPAR yes 49419879
chr16 89050265 89050276 ETV2 JASPAR yes 12313054
chr16 89050265 89050276 ETV2 JASPAR yes 49419880
chr16 89050266 89050277 FLI1 JASPAR yes 12313055
chr16 89050266 89050277 FLI1 JASPAR yes 49419881
chr16 89050284 89050299 PRDM1 JASPAR yes 12313056
chr16 89050284 89050299 PRDM1 JASPAR yes 49419882
chr16 89050285 89050300 HNF4G JASPAR yes 12313057
chr16 89050285 89050300 HNF4G JASPAR yes 49419883
chr16 89050288 89050301 NFKB2 JASPAR yes 12313058
chr16 89050288 89050301 NFKB2 JASPAR yes 49419884
chr16 89050289 89050299 NFKB1 JASPAR yes 12313059
chr16 89050289 89050299 NFKB1 JASPAR yes 49419885
chr16 89050289 89050300 NFKB1 JASPAR yes 12313060
chr16 89050289 89050300 NFKB1 JASPAR yes 49419886
chr16 89050290 89050300 NFKB1 JASPAR yes 12313061
chr16 89050290 89050300 RELA JASPAR yes 12313062
chr16 89050290 89050300 REL JASPAR yes 12313063
chr16 89050290 89050300 NFKB1 JASPAR yes 49419887
chr16 89050290 89050300 RELA JASPAR yes 49419888
chr16 89050290 89050300 REL JASPAR yes 49419889
chr16 89050297 89050307 SP1 JASPAR yes 12313064
chr16 89050297 89050307 SP1 JASPAR yes 49419890
chr16 89050302 89050316 GLIS2 JASPAR yes 12313065
chr16 89050302 89050316 GLIS2 JASPAR yes 49419891
chr16 89050304 89050315 EBF1 JASPAR yes 12313066
chr16 89050304 89050315 EBF1 JASPAR yes 49419892
chr16 89050312 89050316 H4TF2 TRANSFAC yes 12313067
chr16 89050312 89050316 H4TF2 TRANSFAC yes 49419893
chr16 89050320 89050324 H4TF2 TRANSFAC yes 12313068
chr16 89050320 89050324 H4TF2 TRANSFAC yes 49419894
chr16 89050321 89050340 PAX5 JASPAR yes 12313069
chr16 89050321 89050340 PAX5 JASPAR yes 49419895
chr16 89050338 89050348 NHLH1 JASPAR yes 12313070
chr16 89050338 89050348 NHLH1 JASPAR yes 49419896
chr16 89050344 89050350 TCF4 TRANSFAC yes 12313071
chr16 89050344 89050350 TCF4 TRANSFAC yes 49419897
chr16 89050346 89050360 SPI1 JASPAR yes 12313072
chr16 89050346 89050360 SPI1 JASPAR yes 49419898
chr16 89050350 89050363 NFKB1 JASPAR yes 12313073
chr16 89050350 89050363 NFKB2 JASPAR yes 12313074
chr16 89050350 89050363 NFKB1 JASPAR yes 49419899
chr16 89050350 89050363 NFKB2 JASPAR yes 49419900
chr16 89050351 89050362 NFKB1 JASPAR yes 12313075
chr16 89050351 89050362 NFKB1 JASPAR yes 49419901
chr16 89050352 89050357 ETS2 TRANSFAC yes 12313076
chr16 89050352 89050357 ETS2 TRANSFAC yes 49419902
chr16 89050352 89050362 NFKB1 JASPAR yes 12313077
chr16 89050352 89050362 RELA JASPAR yes 12313078
chr16 89050352 89050362 NFKB1 JASPAR yes 49419903
chr16 89050352 89050362 RELA JASPAR yes 49419904
chr16 89050352 89050363 NFKB1 JASPAR yes 12313079
chr16 89050352 89050363 NFKB1 JASPAR yes 49419905
chr16 89050371 89050386 PRDM1 JASPAR yes 12313080
chr16 89050371 89050386 PRDM1 JASPAR yes 49419906
chr16 89050392 89050402 SP1 JASPAR yes 12313081
chr16 89050392 89050402 SP1 JASPAR yes 49419907
chr16 89050393 89050398 SP1 TRANSFAC yes 12313082
chr16 89050393 89050398 SP1 TRANSFAC yes 49419908
chr16 89050394 89050399 SP1 TRANSFAC yes 12313083
chr16 89050394 89050399 SP1 TRANSFAC yes 49419909
chr16 89050394 89050400 SP1 TRANSFAC yes 12313084
chr16 89050394 89050400 SP1 TRANSFAC yes 49419910
chr16 89050423 89050428 SP1 TRANSFAC yes 12313085
chr16 89050423 89050428 SP1 TRANSFAC yes 49419911
chr16 89050423 89050429 SP1 TRANSFAC yes 12313086
chr16 89050423 89050429 SP1 TRANSFAC yes 49419912
chr16 89050438 89050449 FOS JASPAR yes 12313087
chr16 89050438 89050449 FOSL1 JASPAR yes 12313088
chr16 89050438 89050449 JUND JASPAR yes 12313089
chr16 89050438 89050449 FOS JASPAR yes 49419913
chr16 89050438 89050449 FOSL1 JASPAR yes 49419914
chr16 89050438 89050449 JUND JASPAR yes 49419915
SNP sites on vista23540[chr16:89050259-89050442]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr16 89050383 rs376289118 G A,C
EBF1 PRDM1 RELA
4670894
Genes possibly regulated by vista23540[chr16:89050259-89050442]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr16 88941266 89043612 - CBFA2T3 ENSG00000129993.10 89043612 0.96 0.99 15169 93353
chr16 89006197 89017932 + RP11-830F9.6 ENSG00000205018.2 89006197 0.91 1.0 15170 55938
Expression level of Genes
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miRNAs possibly regulated by vista23540[chr16:89050259-89050442]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results