EnhancerDB
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  3. vista24[chr1:1107193-1107436]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24[chr1:1107193-1107436]
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Tissue distribution of vista24
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Transcription factor that possibly regulate vista24[chr1:1107193-1107436]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 1107194 1107199 SP1 TRANSFAC yes 118214172
chr1 1107198 1107209 NFKB1 JASPAR yes 118214173
chr1 1107202 1107207 SP1 TRANSFAC yes 118214174
chr1 1107203 1107213 ZNF740 JASPAR yes 118214175
chr1 1107203 1107218 ZIC4 JASPAR yes 118214176
chr1 1107205 1107219 PLAG1 JASPAR yes 118214177
chr1 1107205 1107225 RREB1 JASPAR yes 118214178
chr1 1107212 1107217 SP1 TRANSFAC yes 118214179
chr1 1107212 1107218 SP1 TRANSFAC yes 118214180
chr1 1107215 1107225 SP1 JASPAR yes 118214181
chr1 1107220 1107226 ETS1 JASPAR yes 118214182
chr1 1107220 1107226 SPI1 JASPAR yes 118214183
chr1 1107227 1107242 PRDM1 JASPAR yes 118214184
chr1 1107237 1107242 ETS2 TRANSFAC yes 118214185
chr1 1107237 1107254 BCL6B JASPAR yes 118214186
chr1 1107245 1107256 NFKB1 JASPAR yes 118214187
chr1 1107246 1107256 NFKB1 JASPAR yes 118214188
chr1 1107249 1107263 EBF1 JASPAR yes 118214189
chr1 1107250 1107261 EBF1 JASPAR yes 118214190
chr1 1107250 1107265 RFX5 JASPAR yes 118214191
chr1 1107251 1107257 MZF1 JASPAR yes 118214192
chr1 1107266 1107271 SP1 TRANSFAC yes 118214193
chr1 1107271 1107292 ZNF263 JASPAR yes 118214194
chr1 1107289 1107304 TFAP2C JASPAR yes 118214195
chr1 1107291 1107305 EBF1 JASPAR yes 118214196
chr1 1107292 1107303 EBF1 JASPAR yes 118214197
chr1 1107293 1107302 TFAP2A JASPAR yes 118214198
chr1 1107310 1107323 NFKB1 JASPAR yes 118214199
chr1 1107310 1107323 NFKB2 JASPAR yes 118214200
chr1 1107311 1107322 NFKB1 JASPAR yes 118214201
chr1 1107312 1107322 NFKB1 JASPAR yes 118214202
chr1 1107312 1107322 RELA JASPAR yes 118214203
chr1 1107316 1107327 TFAP2A JASPAR yes 118214204
chr1 1107316 1107327 TFAP2B JASPAR yes 118214205
chr1 1107316 1107327 TFAP2C JASPAR yes 118214206
chr1 1107317 1107326 TFAP2A JASPAR yes 118214207
chr1 1107324 1107335 E2F1 JASPAR yes 118214208
chr1 1107328 1107333 SP1 TRANSFAC yes 118214209
chr1 1107328 1107334 SP1 TRANSFAC yes 118214210
chr1 1107349 1107354 SP1 TRANSFAC yes 118214211
chr1 1107361 1107370 HIC2 JASPAR yes 118214212
chr1 1107364 1107368 LFA1 TRANSFAC yes 118214213
chr1 1107409 1107424 RUNX2 JASPAR yes 118214214
chr1 1107410 1107419 RUNX2 JASPAR yes 118214215
chr1 1107410 1107420 RUNX3 JASPAR yes 118214216
SNP sites on vista24[chr1:1107193-1107436]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 1107205 rs534289751 G A
NFKB1 PLAG1 RREB1 SP1 ZIC4 ZNF740
4027
chr1 1107226 rs547882875 G A,T
ETS1 SPI1
4028
chr1 1107267 rs575519625 G A
SP1
4029
chr1 1107294 rs200555874 G GC
EBF1 TFAP2A TFAP2C
4030
chr1 1107303 rs117266927 A G
EBF1 TFAP2C
4031
chr1 1107305 rs118112965 A C
EBF1
4032
chr1 1107307 rs117052210 A G no 4033
chr1 1107311 rs539958582 C T
NFKB1 NFKB2
4034
chr1 1107312 rs61768481 G A,C
NFKB1 NFKB2 RELA
4035
chr1 1107322 rs112209474 C A
NFKB1 NFKB2 RELA TFAP2A TFAP2B TFAP2C
4036
chr1 1107359 rs115656418 C A,T no 4037
chr1 1107365 rs542059822 G A
HIC2 LFA1
4038
chr1 1107379 rs114011993 C T no 4039
Genes possibly regulated by vista24[chr1:1107193-1107436]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 1006346 1009687 - RNF223 ENSG00000237330.2 1009687 0.97 1.0 14 2494
chr1 1017198 1051741 - C1orf159 ENSG00000131591.13 1051741 0.65 1.0 15 44548
chr1 1109264 1133315 + TTLL10 ENSG00000162571.9 1109264 0.93 1.0 16 98172
chr1 1138888 1142071 - TNFRSF18 ENSG00000186891.9 1142071 0.88 1.0 17 65365
chr1 1146706 1149518 - TNFRSF4 ENSG00000186827.6 1149518 0.86 1.0 18 57918
chr1 1152288 1167411 - SDF4 ENSG00000078808.12 1167411 0.56 1.0 19 40025
chr1 1167629 1170421 + B3GALT6 ENSG00000176022.3 1167629 0.6 0.99 20 39807
chr1 1177826 1182102 - FAM132A ENSG00000184163.3 1182102 0.9 0.99 21 25334
Expression level of Genes
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miRNAs possibly regulated by vista24[chr1:1107193-1107436]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr1 33798006 33798028 - hsa-miR-3605-3p MIMAT0017982 33815499 0.0 0.805149 0.676023 30
Expression level of miRNAs
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