EnhancerDB
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  3. vista24300[chr17:26827971-26828324]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24300[chr17:26827971-26828324]
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Tissue distribution of vista24300
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Transcription factor that possibly regulate vista24300[chr17:26827971-26828324]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 26827900 26828538 RELA UCSC Txn Factor no Conserved 108246104
chr17 26827900 26828538 RELA UCSC Txn Factor no Conserved 108246105
chr17 26828020 26828268 PAX5 UCSC Txn Factor no Conserved 108246114
chr17 26827971 26827979 FOXO3 JASPAR yes 21213560
chr17 26827974 26827980 HiNF-A TRANSFAC yes 21213561
chr17 26827983 26827998 SOX21 JASPAR yes 21213562
chr17 26828000 26828008 TBX15 JASPAR yes 21213563
chr17 26828008 26828023 ZIC3 JASPAR yes 21213564
chr17 26828008 26828023 ZIC4 JASPAR yes 21213565
chr17 26828009 26828023 ZIC1 JASPAR yes 21213566
chr17 26828018 26828028 GSC2 JASPAR yes 21213567
chr17 26828018 26828028 GSC JASPAR yes 21213568
chr17 26828019 26828027 OTX1 JASPAR yes 21213569
chr17 26828019 26828027 OTX2 JASPAR yes 21213570
chr17 26828019 26828027 RHOXF1 JASPAR yes 21213571
chr17 26828019 26828028 PITX3 JASPAR yes 21213572
chr17 26828032 26828042 TBX21 JASPAR yes 21213573
chr17 26828032 26828043 TBX20 JASPAR yes 21213574
chr17 26828032 26828043 TBX2 JASPAR yes 21213575
chr17 26828033 26828043 TBR1 JASPAR yes 21213576
chr17 26828043 26828053 ZNF740 JASPAR yes 21213577
chr17 26828046 26828052 MZF1 JASPAR yes 21213578
chr17 26828057 26828074 NR3C1 JASPAR yes 21213579
chr17 26828057 26828074 NR3C2 JASPAR yes 21213580
chr17 26828059 26828074 AR JASPAR yes 21213581
chr17 26828071 26828081 ZNF740 JASPAR yes 21213582
chr17 26828073 26828087 PLAG1 JASPAR yes 21213583
chr17 26828073 26828093 RREB1 JASPAR yes 21213584
chr17 26828074 26828094 RREB1 JASPAR yes 21213585
chr17 26828078 26828098 RREB1 JASPAR yes 21213586
chr17 26828080 26828092 ZBTB7B JASPAR yes 21213587
chr17 26828083 26828093 SP1 JASPAR yes 21213588
chr17 26828083 26828093 ZNF740 JASPAR yes 21213589
chr17 26828083 26828097 GLIS2 JASPAR yes 21213590
chr17 26828083 26828097 GLIS3 JASPAR yes 21213591
chr17 26828084 26828094 ZNF740 JASPAR yes 21213592
chr17 26828085 26828105 RREB1 JASPAR yes 21213593
chr17 26828103 26828108 NFY TRANSFAC yes 21213594
chr17 26828104 26828114 NFATC3 JASPAR yes 21213595
chr17 26828106 26828117 NFKB1 JASPAR yes 21213596
chr17 26828107 26828117 NFKB1 JASPAR yes 21213597
chr17 26828107 26828117 RELA JASPAR yes 21213598
chr17 26828107 26828117 REL JASPAR yes 21213599
chr17 26828116 26828126 RELA JASPAR yes 21213600
chr17 26828117 26828127 RELA JASPAR yes 21213601
chr17 26828117 26828128 NFKB1 JASPAR yes 21213602
chr17 26828119 26828124 H4TF1 TRANSFAC yes 21213603
chr17 26828121 26828135 EBF1 JASPAR yes 21213604
chr17 26828123 26828134 EBF1 JASPAR yes 21213605
chr17 26828129 26828148 PAX5 JASPAR yes 21213606
chr17 26828131 26828135 ESR1 TRANSFAC yes 21213607
chr17 26828132 26828148 NFYA JASPAR yes 21213608
chr17 26828132 26828149 PAX1 JASPAR yes 21213609
chr17 26828132 26828149 PAX9 JASPAR yes 21213610
chr17 26828133 26828151 NFYA JASPAR yes 21213611
chr17 26828152 26828171 REST JASPAR yes 21213612
chr17 26828162 26828174 NHLH1 JASPAR yes 21213613
chr17 26828163 26828173 NHLH1 JASPAR yes 21213614
chr17 26828168 26828174 NFE2 TRANSFAC yes 21213615
chr17 26828171 26828177 SP1 TRANSFAC yes 21213616
chr17 26828171 26828191 RREB1 JASPAR yes 21213617
chr17 26828180 26828185 SP1 TRANSFAC yes 21213618
chr17 26828213 26828228 NFYB JASPAR yes 21213619
chr17 26828215 26828231 NFYA JASPAR yes 21213620
chr17 26828216 26828234 NFYA JASPAR yes 21213621
chr17 26828220 26828224 H1TF2 TRANSFAC yes 21213622
chr17 26828220 26828224 NFE TRANSFAC yes 21213623
chr17 26828220 26828224 SRF TRANSFAC yes 21213624
chr17 26828228 26828232 NFE TRANSFAC yes 21213625
chr17 26828239 26828245 MZF1 JASPAR yes 21213626
chr17 26828242 26828249 ETS1 TRANSFAC yes 21213627
chr17 26828254 26828264 POU6F2 JASPAR yes 21213628
chr17 26828255 26828265 ALX3 JASPAR yes 21213629
chr17 26828255 26828265 EMX1 JASPAR yes 21213630
chr17 26828255 26828265 EMX2 JASPAR yes 21213631
chr17 26828255 26828265 EN2 JASPAR yes 21213632
chr17 26828255 26828265 ESX1 JASPAR yes 21213633
chr17 26828255 26828265 EVX1 JASPAR yes 21213634
chr17 26828255 26828265 EVX2 JASPAR yes 21213635
chr17 26828255 26828265 GBX1 JASPAR yes 21213636
chr17 26828255 26828265 GBX2 JASPAR yes 21213637
chr17 26828255 26828265 GSX1 JASPAR yes 21213638
chr17 26828255 26828265 GSX2 JASPAR yes 21213639
chr17 26828255 26828265 HESX1 JASPAR yes 21213640
chr17 26828255 26828265 HOXA2 JASPAR yes 21213641
chr17 26828255 26828265 HOXB2 JASPAR yes 21213642
chr17 26828255 26828265 HOXB3 JASPAR yes 21213643
chr17 26828255 26828265 LBX2 JASPAR yes 21213644
chr17 26828255 26828265 LHX2 JASPAR yes 21213645
chr17 26828255 26828265 LHX6 JASPAR yes 21213646
chr17 26828255 26828265 MEOX1 JASPAR yes 21213647
chr17 26828255 26828265 MEOX2 JASPAR yes 21213648
chr17 26828255 26828265 MIXL1 JASPAR yes 21213649
chr17 26828255 26828265 NOTO JASPAR yes 21213650
chr17 26828255 26828265 POU6F1 JASPAR yes 21213651
chr17 26828255 26828265 RAX JASPAR yes 21213652
chr17 26828256 26828264 BSX JASPAR yes 21213653
chr17 26828256 26828264 DLX6 JASPAR yes 21213654
chr17 26828256 26828264 EN1 JASPAR yes 21213655
chr17 26828256 26828264 ISX JASPAR yes 21213656
chr17 26828256 26828264 LBX1 JASPAR yes 21213657
chr17 26828256 26828264 LHX9 JASPAR yes 21213658
chr17 26828256 26828264 LMX1A JASPAR yes 21213659
chr17 26828256 26828264 LMX1B JASPAR yes 21213660
chr17 26828256 26828264 NKX6-1 JASPAR yes 21213661
chr17 26828256 26828264 NKX6-2 JASPAR yes 21213662
chr17 26828256 26828264 PAX4 JASPAR yes 21213663
chr17 26828256 26828264 PDX1 JASPAR yes 21213664
chr17 26828256 26828264 PRRX1 JASPAR yes 21213665
chr17 26828256 26828264 RAX2 JASPAR yes 21213666
chr17 26828256 26828264 SHOX JASPAR yes 21213667
chr17 26828256 26828264 UNCX JASPAR yes 21213668
chr17 26828256 26828264 VAX1 JASPAR yes 21213669
chr17 26828256 26828264 VAX2 JASPAR yes 21213670
chr17 26828256 26828264 VSX1 JASPAR yes 21213671
chr17 26828256 26828264 VSX2 JASPAR yes 21213672
chr17 26828261 26828264 MYB TRANSFAC yes 21213673
chr17 26828264 26828284 RREB1 JASPAR yes 21213674
chr17 26828273 26828279 MZF1 JASPAR yes 21213675
chr17 26828289 26828299 NEUROG2 JASPAR yes 21213676
chr17 26828289 26828300 USF2 JASPAR yes 21213677
chr17 26828290 26828300 MAX JASPAR yes 21213678
chr17 26828296 26828300 H4TF2 TRANSFAC yes 21213679
chr17 26828301 26828316 TFAP2A JASPAR yes 21213680
chr17 26828301 26828316 TFAP2C JASPAR yes 21213681
chr17 26828303 26828318 TFAP2A JASPAR yes 21213682
SNP sites on vista24300[chr17:26827971-26828324]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 26828037 rs12150075 T C
PAX5 RELA TBR1 TBX2 TBX20 TBX21
4812506
chr17 26828082 rs115161650 C T
PAX5 PLAG1 RELA RREB1 ZBTB7B
4812507
chr17 26828084 rs575041262 A AC
GLIS2 GLIS3 PAX5 PLAG1 RELA RREB1 SP1 ZBTB7B ZNF740
4812508
chr17 26828183 rs547656564 G A
PAX5 RELA RREB1 SP1
4812509
chr17 26828226 rs115610626 G A
NFYA NFYB PAX5 RELA
4812510
chr17 26828238 rs117004690 C G,T
PAX5 RELA
4812511
chr17 26828251 rs570795789 C A
PAX5 RELA
4812512
chr17 26828255 rs531636184 C G
ALX3 EMX1 EMX2 EN2 ESX1 EVX1 EVX2 GBX1 GBX2 GSX1 GSX2 HESX1 HOXA2 HOXB2 HOXB3 LBX2 LHX2 LHX6 MEOX1 MEOX2 MIXL1 NOTO PAX5 POU6F1 POU6F2 RAX RELA
4812513
chr17 26828300 rs180703505 C T
H4TF2 MAX RELA USF2
4812514
chr17 26828314 rs140084276 G A
RELA TFAP2A TFAP2C
4812515
Genes possibly regulated by vista24300[chr17:26827971-26828324]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 26721661 26734215 - SLC46A1 ENSG00000076351.8 26734215 0.78 1.0 15570 6244
chr17 26800311 26824799 + SLC13A2 ENSG00000007216.10 26800311 0.99 1.0 15572 72340
chr17 26833261 26865914 + FOXN1 ENSG00000109101.3 26833261 0.99 0.99 15573 95063
chr17 26873725 26879686 - UNC119 ENSG00000109103.7 26879686 0.75 1.0 15574 48638
chr17 26880401 26898890 - PIGS ENSG00000087111.16 26898890 0.73 1.0 15575 29434
chr17 26900133 26904282 - ALDOC ENSG00000109107.9 26904282 0.88 1.0 15576 24042
chr17 26904588 26926297 - SPAG5 ENSG00000076382.12 26926297 0.92 1.0 15577 2027
Expression level of Genes
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miRNAs possibly regulated by vista24300[chr17:26827971-26828324]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results