EnhancerDB
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  3. vista24439[chr17:30851083-30851355]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24439[chr17:30851083-30851355]
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Tissue distribution of vista24439
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Transcription factor that possibly regulate vista24439[chr17:30851083-30851355]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 30850129 30851625 POLR2A UCSC Txn Factor no Conserved 108250206
chr17 30850129 30851625 POLR2A UCSC Txn Factor no Conserved 108250207
chr17 30851064 30851522 ATF2 UCSC Txn Factor no Conserved 108250258
chr17 30851186 30851580 RUNX3 UCSC Txn Factor no Conserved 108250276
chr17 30851299 30851605 PAX5 UCSC Txn Factor no Conserved 108250288
chr17 30851108 30851120 GRHL1 JASPAR yes 21220506
chr17 30851108 30851120 GRHL1 JASPAR yes 53887473
chr17 30851109 30851119 TFCP2 JASPAR yes 21220507
chr17 30851109 30851119 TFCP2 JASPAR yes 53887474
chr17 30851123 30851144 IRF1 JASPAR yes 21220508
chr17 30851123 30851144 IRF1 JASPAR yes 53887475
chr17 30851138 30851144 TBP TRANSFAC yes 21220509
chr17 30851138 30851144 TBP TRANSFAC yes 53887476
chr17 30851157 30851175 SRF JASPAR yes 21220510
chr17 30851157 30851175 SRF JASPAR yes 53887477
chr17 30851178 30851193 FOXP1 JASPAR yes 21220511
chr17 30851178 30851193 FOXP1 JASPAR yes 53887478
chr17 30851179 30851190 FOXP2 JASPAR yes 21220512
chr17 30851179 30851190 FOXP2 JASPAR yes 53887479
chr17 30851181 30851192 FOXA1 JASPAR yes 21220513
chr17 30851181 30851192 FOXA1 JASPAR yes 53887480
chr17 30851186 30851197 EBF1 JASPAR yes 21220514
chr17 30851186 30851197 EBF1 JASPAR yes 53887481
chr17 30851214 30851226 IRF1 JASPAR yes 21220515
chr17 30851214 30851226 IRF1 JASPAR yes 53887482
chr17 30851217 30851227 RELA JASPAR yes 21220516
chr17 30851217 30851227 RELA JASPAR yes 53887483
chr17 30851226 30851241 FOXP1 JASPAR yes 21220517
chr17 30851226 30851241 FOXP1 JASPAR yes 53887484
chr17 30851232 30851238 TBP TRANSFAC yes 21220518
chr17 30851232 30851238 TBP TRANSFAC yes 53887485
chr17 30851244 30851248 YY1 TRANSFAC yes 21220519
chr17 30851244 30851248 YY1 TRANSFAC yes 53887486
chr17 30851274 30851279 ETS2 TRANSFAC yes 21220520
chr17 30851274 30851279 ETS2 TRANSFAC yes 53887487
chr17 30851277 30851283 ETS1 JASPAR yes 21220521
chr17 30851277 30851283 SPI1 JASPAR yes 21220522
chr17 30851277 30851283 ETS1 JASPAR yes 53887488
chr17 30851277 30851283 SPI1 JASPAR yes 53887489
chr17 30851283 30851288 ATF1 TRANSFAC yes 21220523
chr17 30851283 30851288 ATF1 TRANSFAC yes 53887490
chr17 30851294 30851313 CTCF JASPAR yes 21220524
chr17 30851294 30851313 CTCF JASPAR yes 53887491
chr17 30851295 30851306 E2F6 JASPAR yes 21220525
chr17 30851295 30851306 E2F6 JASPAR yes 53887492
chr17 30851305 30851317 E2F8 JASPAR yes 21220526
chr17 30851305 30851317 E2F8 JASPAR yes 53887493
chr17 30851318 30851339 IRF1 JASPAR yes 21220527
chr17 30851318 30851339 IRF1 JASPAR yes 53887494
chr17 30851324 30851345 IRF1 JASPAR yes 21220528
chr17 30851324 30851345 IRF1 JASPAR yes 53887495
chr17 30851334 30851345 CEBPB JASPAR yes 21220529
chr17 30851334 30851345 CEBPB JASPAR yes 53887496
chr17 30851335 30851346 CEBPA JASPAR yes 21220530
chr17 30851335 30851346 CEBPA JASPAR yes 53887497
chr17 30851336 30851347 TBX20 JASPAR yes 21220531
chr17 30851336 30851347 TBX20 JASPAR yes 53887498
SNP sites on vista24439[chr17:30851083-30851355]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 30851173 rs201712468 AAGCAT A
ATF2 POLR2A SRF
4831355
chr17 30851208 rs146305846 A G
ATF2 POLR2A RUNX3
4831356
chr17 30851233 rs200118281 T TA
ATF2 FOXP1 POLR2A RUNX3 TBP
4831357
Genes possibly regulated by vista24439[chr17:30851083-30851355]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 30771279 30810336 + PSMD11 ENSG00000108671.5 30771279 0.84 0.99 15636 20196
chr17 30813637 30818274 + CDK5R1 ENSG00000176749.4 30813637 0.92 1.0 15637 62554
Expression level of Genes
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miRNAs possibly regulated by vista24439[chr17:30851083-30851355]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results