EnhancerDB
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  3. vista24685[chr17:38254249-38254664]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24685[chr17:38254249-38254664]
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Tissue distribution of vista24685
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Transcription factor that possibly regulate vista24685[chr17:38254249-38254664]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 38254236 38256154 POLR2A UCSC Txn Factor no Conserved 108254046
chr17 38254370 38254774 MXI1 UCSC Txn Factor no Conserved 108254076
chr17 38254424 38254698 USF1 UCSC Txn Factor no Conserved 108254086
chr17 38254542 38254866 CEBPB UCSC Txn Factor no Conserved 108254100
chr17 38254265 38254269 NFE TRANSFAC yes 21232506
chr17 38254266 38254271 GATA2 JASPAR yes 21232507
chr17 38254292 38254300 TBX15 JASPAR yes 21232508
chr17 38254292 38254300 TBX4 JASPAR yes 21232509
chr17 38254314 38254329 AR JASPAR yes 21232510
chr17 38254314 38254331 NR3C1 JASPAR yes 21232511
chr17 38254314 38254331 NR3C2 JASPAR yes 21232512
chr17 38254314 38254332 NR3C1 JASPAR yes 21232513
chr17 38254323 38254327 NFE TRANSFAC yes 21232514
chr17 38254328 38254343 TFAP2C JASPAR yes 21232515
chr17 38254329 38254340 TFAP2A JASPAR yes 21232516
chr17 38254329 38254340 TFAP2B JASPAR yes 21232517
chr17 38254329 38254340 TFAP2C JASPAR yes 21232518
chr17 38254330 38254339 TFAP2A JASPAR yes 21232519
chr17 38254346 38254356 MZF1 JASPAR yes 21232520
chr17 38254362 38254377 RFX5 JASPAR yes 21232521
chr17 38254362 38254382 ESR1 JASPAR yes 21232522
chr17 38254366 38254383 ESR1 JASPAR yes 21232523
chr17 38254366 38254384 ESR2 JASPAR yes 21232524
chr17 38254367 38254387 ESR1 JASPAR yes 21232525
chr17 38254368 38254377 SRY JASPAR yes 21232526
chr17 38254370 38254373 MYB TRANSFAC yes 21232527
chr17 38254371 38254386 SOX21 JASPAR yes 21232528
chr17 38254374 38254385 ESRRA JASPAR yes 21232529
chr17 38254374 38254385 ESRRB JASPAR yes 21232530
chr17 38254375 38254390 HNF4A JASPAR yes 21232531
chr17 38254376 38254391 HNF4G JASPAR yes 21232532
chr17 38254399 38254414 HNF4A JASPAR yes 21232533
chr17 38254400 38254414 NR2F1 JASPAR yes 21232534
chr17 38254400 38254414 RXRB JASPAR yes 21232535
chr17 38254400 38254414 RXRG JASPAR yes 21232536
chr17 38254400 38254415 HNF4G JASPAR yes 21232537
chr17 38254407 38254424 RARA JASPAR yes 21232538
chr17 38254414 38254425 DMRT3 JASPAR yes 21232539
chr17 38254422 38254440 NFYA JASPAR yes 21232540
chr17 38254424 38254430 NFIC JASPAR yes 21232541
chr17 38254426 38254430 H1TF2 TRANSFAC yes 21232542
chr17 38254426 38254430 NFE TRANSFAC yes 21232543
chr17 38254426 38254430 SRF TRANSFAC yes 21232544
chr17 38254430 38254448 ESR1 JASPAR yes 21232545
chr17 38254475 38254488 SMAD2 JASPAR yes 21232546
chr17 38254482 38254490 TBX5 JASPAR yes 21232547
chr17 38254504 38254509 NFY TRANSFAC yes 21232548
chr17 38254516 38254526 SP1 JASPAR yes 21232549
chr17 38254517 38254527 SP1 JASPAR yes 21232550
chr17 38254518 38254523 SP1 TRANSFAC yes 21232551
chr17 38254519 38254524 SP1 TRANSFAC yes 21232552
chr17 38254519 38254525 SP1 TRANSFAC yes 21232553
chr17 38254523 38254534 E2F6 JASPAR yes 21232554
chr17 38254524 38254529 SP1 TRANSFAC yes 21232555
chr17 38254546 38254556 MAX JASPAR yes 21232556
chr17 38254546 38254558 PKNOX1 JASPAR yes 21232557
chr17 38254546 38254558 PKNOX2 JASPAR yes 21232558
chr17 38254549 38254560 USF1 JASPAR yes 21232559
chr17 38254549 38254560 USF2 JASPAR yes 21232560
chr17 38254550 38254560 MAX JASPAR yes 21232561
chr17 38254560 38254563 MYB TRANSFAC yes 21232562
chr17 38254560 38254572 HES5 JASPAR yes 21232563
chr17 38254560 38254572 HES7 JASPAR yes 21232564
chr17 38254560 38254572 PKNOX1 JASPAR yes 21232565
chr17 38254560 38254572 PKNOX2 JASPAR yes 21232566
chr17 38254560 38254572 TGIF1 JASPAR yes 21232567
chr17 38254560 38254572 TGIF2 JASPAR yes 21232568
chr17 38254561 38254571 CLOCK JASPAR yes 21232569
chr17 38254561 38254571 NEUROG2 JASPAR yes 21232570
chr17 38254589 38254599 MAX JASPAR yes 21232571
chr17 38254589 38254600 USF2 JASPAR yes 21232572
chr17 38254589 38254601 HES5 JASPAR yes 21232573
chr17 38254589 38254601 HES7 JASPAR yes 21232574
chr17 38254589 38254601 PKNOX2 JASPAR yes 21232575
chr17 38254595 38254610 ESR2 JASPAR yes 21232576
chr17 38254605 38254625 RREB1 JASPAR yes 21232577
chr17 38254628 38254632 LFA1 TRANSFAC yes 21232578
chr17 38254632 38254638 SP1 TRANSFAC yes 21232579
chr17 38254633 38254638 SP1 TRANSFAC yes 21232580
chr17 38254637 38254652 MEF2C JASPAR yes 21232581
chr17 38254638 38254650 SRF JASPAR yes 21232582
chr17 38254638 38254653 MEF2A JASPAR yes 21232583
chr17 38254659 38254663 ESR1 TRANSFAC yes 21232584
SNP sites on vista24685[chr17:38254249-38254664]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 38254298 rs10451256 C G
POLR2A TBX15 TBX4
4865159
chr17 38254492 rs2071427 C T
MXI1 POLR2A USF1
4865160
Genes possibly regulated by vista24685[chr17:38254249-38254664]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 38171614 38174066 + CSF3 ENSG00000108342.8 38171614 0.95 0.99 15755 17365
chr17 38175350 38217468 - MED24 ENSG00000008838.13 38217468 0.65 1.0 15756 63219
chr17 38214543 38250120 + THRA ENSG00000126351.8 38214543 0.69 1.0 15757 60294
chr17 38249040 38256978 - NR1D1 ENSG00000126368.5 38256978 0.77 1.0 15758 97686
chr17 38278551 38293042 + MSL1 ENSG00000188895.7 38278551 0.64 0.99 15759 76113
chr17 38296571 38328436 + CASC3 ENSG00000108349.10 38296571 0.64 1.0 15760 58093
chr17 38333263 38351908 + RAPGEFL1 ENSG00000108352.7 38333263 0.92 1.0 15761 21401
Expression level of Genes
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miRNAs possibly regulated by vista24685[chr17:38254249-38254664]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results