EnhancerDB
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  3. vista24778[chr17:39683248-39683750]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24778[chr17:39683248-39683750]
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Tissue distribution of vista24778
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Transcription factor that possibly regulate vista24778[chr17:39683248-39683750]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 39682964 39685074 POLR2A UCSC Txn Factor no Conserved 108258486
chr17 39683302 39683313 DMRT3 JASPAR yes 21238172
chr17 39683309 39683313 YY1 TRANSFAC yes 21238173
chr17 39683313 39683323 HOXC10 JASPAR yes 21238174
chr17 39683313 39683323 HOXD11 JASPAR yes 21238175
chr17 39683313 39683324 HOXC11 JASPAR yes 21238176
chr17 39683313 39683324 HOXC12 JASPAR yes 21238177
chr17 39683313 39683324 HOXD12 JASPAR yes 21238178
chr17 39683362 39683372 MZF1 JASPAR yes 21238179
chr17 39683362 39683377 TFAP2A JASPAR yes 21238180
chr17 39683362 39683377 TFAP2C JASPAR yes 21238181
chr17 39683364 39683376 TFAP2A JASPAR yes 21238182
chr17 39683364 39683379 TFAP2A JASPAR yes 21238183
chr17 39683365 39683376 TFAP2A JASPAR yes 21238184
chr17 39683365 39683376 TFAP2B JASPAR yes 21238185
chr17 39683365 39683379 PLAG1 JASPAR yes 21238186
chr17 39683436 39683457 REST JASPAR yes 21238187
chr17 39683448 39683452 H4TF2 TRANSFAC yes 21238188
chr17 39683453 39683459 MZF1 JASPAR yes 21238189
chr17 39683469 39683479 SP1 JASPAR yes 21238190
chr17 39683474 39683485 E2F6 JASPAR yes 21238191
chr17 39683487 39683495 SP1 TRANSFAC yes 21238192
chr17 39683487 39683497 SP1 JASPAR yes 21238193
chr17 39683488 39683494 SP1 TRANSFAC yes 21238194
chr17 39683488 39683498 SP1 JASPAR yes 21238195
chr17 39683490 39683495 SP1 TRANSFAC yes 21238196
chr17 39683491 39683506 TFAP2C JASPAR yes 21238197
chr17 39683497 39683502 SP1 TRANSFAC yes 21238198
chr17 39683533 39683548 TFAP2A JASPAR yes 21238199
chr17 39683533 39683548 TFAP2C JASPAR yes 21238200
chr17 39683534 39683553 REST JASPAR yes 21238201
chr17 39683536 39683547 EBF1 JASPAR yes 21238202
chr17 39683536 39683548 TFAP2A JASPAR yes 21238203
chr17 39683536 39683548 TFAP2B JASPAR yes 21238204
chr17 39683536 39683548 TFAP2C JASPAR yes 21238205
chr17 39683537 39683546 TFAP2A JASPAR yes 21238206
chr17 39683538 39683547 TFAP2A JASPAR yes 21238207
chr17 39683541 39683562 ZNF263 JASPAR yes 21238208
chr17 39683542 39683548 SP1 TRANSFAC yes 21238209
chr17 39683542 39683553 E2F1 JASPAR yes 21238210
chr17 39683543 39683548 SP1 TRANSFAC yes 21238211
chr17 39683543 39683554 E2F4 JASPAR yes 21238212
chr17 39683543 39683554 E2F6 JASPAR yes 21238213
chr17 39683544 39683549 SP1 TRANSFAC yes 21238214
chr17 39683553 39683563 SP1 JASPAR yes 21238215
chr17 39683554 39683568 TLX1 JASPAR yes 21238216
chr17 39683568 39683581 TFAP2B JASPAR yes 21238217
chr17 39683592 39683602 ELK1 JASPAR yes 21238218
chr17 39683592 39683602 GABPA JASPAR yes 21238219
chr17 39683594 39683600 ETS1 JASPAR yes 21238220
chr17 39683594 39683600 SPI1 JASPAR yes 21238221
chr17 39683594 39683604 ELK1 JASPAR yes 21238222
chr17 39683610 39683618 TEAD3 JASPAR yes 21238223
chr17 39683634 39683649 NR2C2 JASPAR yes 21238224
chr17 39683646 39683650 LFA1 TRANSFAC yes 21238225
chr17 39683660 39683678 ESR1 JASPAR yes 21238226
chr17 39683670 39683689 PAX5 JASPAR yes 21238227
chr17 39683676 39683690 IRF7 JASPAR yes 21238228
chr17 39683678 39683690 IRF1 JASPAR yes 21238229
chr17 39683688 39683701 HSF4 JASPAR yes 21238230
chr17 39683710 39683725 TFAP2C JASPAR yes 21238231
chr17 39683712 39683724 INSM1 JASPAR yes 21238232
chr17 39683733 39683737 LFA1 TRANSFAC yes 21238233
SNP sites on vista24778[chr17:39683248-39683750]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 39683323 rs535616937 C T
HOXC10 HOXC11 HOXC12 HOXD11 HOXD12 POLR2A
4873223
chr17 39683453 rs185150775 C T
MZF1 POLR2A REST
4873224
chr17 39683505 rs540509578 C T
POLR2A TFAP2C
4873225
chr17 39683538 rs574013896 G A
EBF1 POLR2A REST TFAP2A TFAP2B TFAP2C
4873226
chr17 39683693 rs75777594 C T
HSF4 POLR2A
4873227
Genes possibly regulated by vista24778[chr17:39683248-39683750]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 39592698 39597173 - KRT38 ENSG00000171360.3 39597173 0.99 1.0 15825 13925
chr17 39616063 39623681 - KRT32 ENSG00000108759.3 39623681 0.96 1.0 15826 40433
chr17 39632941 39637392 - KRT35 ENSG00000197079.4 39637392 0.93 1.0 15827 54144
chr17 39642388 39648798 - KRT36 ENSG00000126337.9 39648798 0.97 1.0 15828 65550
chr17 39657233 39661957 - KRT13 ENSG00000171401.10 39661957 1.0 1.0 15829 78709
chr17 39669995 39678781 - KRT15 ENSG00000171346.9 39678781 0.94 1.0 15830 95533
chr17 39679869 39684560 - KRT19 ENSG00000171345.9 39684560 0.79 1.0 15831 99190
chr17 39722096 39728310 - KRT9 ENSG00000171403.5 39728310 0.99 1.0 15832 55440
chr17 39738531 39743173 - KRT14 ENSG00000186847.5 39743173 1.0 0.99 15833 40577
chr17 39766030 39772151 - KRT16 ENSG00000186832.4 39772151 0.99 1.0 15834 11599
chr17 39775689 39781094 - KRT17 ENSG00000128422.11 39781094 1.0 1.0 15835 2656
Expression level of Genes
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miRNAs possibly regulated by vista24778[chr17:39683248-39683750]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results