EnhancerDB
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  3. vista24819[chr17:40559988-40560462]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24819[chr17:40559988-40560462]
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Tissue distribution of vista24819
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Transcription factor that possibly regulate vista24819[chr17:40559988-40560462]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 40559987 40560008 ZNF263 JASPAR yes 21240381
chr17 40559987 40560008 ZNF263 JASPAR yes 54302236
chr17 40559993 40560014 ZNF263 JASPAR yes 21240382
chr17 40559993 40560014 ZNF263 JASPAR yes 54302237
chr17 40560036 40560044 FOXL1 JASPAR yes 21240383
chr17 40560036 40560044 FOXL1 JASPAR yes 54302238
chr17 40560036 40560047 FOXB1 JASPAR yes 21240384
chr17 40560036 40560047 FOXB1 JASPAR yes 54302239
chr17 40560037 40560048 FOXB1 JASPAR yes 21240385
chr17 40560037 40560048 FOXB1 JASPAR yes 54302240
chr17 40560038 40560046 FOXL1 JASPAR yes 21240386
chr17 40560038 40560046 FOXL1 JASPAR yes 54302241
chr17 40560038 40560049 FOXB1 JASPAR yes 21240387
chr17 40560038 40560049 FOXB1 JASPAR yes 54302242
chr17 40560040 40560048 FOXL1 JASPAR yes 21240388
chr17 40560040 40560048 FOXL1 JASPAR yes 54302243
chr17 40560049 40560055 TBP TRANSFAC yes 21240389
chr17 40560049 40560055 TBP TRANSFAC yes 54302244
chr17 40560059 40560074 LEF1 JASPAR yes 21240390
chr17 40560059 40560074 LEF1 JASPAR yes 54302245
chr17 40560072 40560077 ETS2 TRANSFAC yes 21240391
chr17 40560072 40560077 ETS2 TRANSFAC yes 54302246
chr17 40560080 40560083 MYB TRANSFAC yes 21240392
chr17 40560080 40560083 MYB TRANSFAC yes 54302247
chr17 40560098 40560118 RREB1 JASPAR yes 21240393
chr17 40560098 40560118 RREB1 JASPAR yes 54302248
chr17 40560107 40560112 SP1 TRANSFAC yes 21240394
chr17 40560107 40560112 SP1 TRANSFAC yes 54302249
chr17 40560132 40560138 SP1 TRANSFAC yes 21240395
chr17 40560132 40560138 SP1 TRANSFAC yes 54302250
chr17 40560171 40560177 MAZ TRANSFAC yes 21240396
chr17 40560171 40560177 MAZ TRANSFAC yes 54302251
chr17 40560172 40560188 ZNF143 JASPAR yes 21240397
chr17 40560172 40560188 ZNF143 JASPAR yes 54302252
chr17 40560174 40560184 GSC2 JASPAR yes 21240398
chr17 40560174 40560184 GSC JASPAR yes 21240399
chr17 40560174 40560184 GSC2 JASPAR yes 54302253
chr17 40560174 40560184 GSC JASPAR yes 54302254
chr17 40560175 40560183 OTX1 JASPAR yes 21240400
chr17 40560175 40560183 OTX2 JASPAR yes 21240401
chr17 40560175 40560183 RHOXF1 JASPAR yes 21240402
chr17 40560175 40560183 OTX1 JASPAR yes 54302255
chr17 40560175 40560183 OTX2 JASPAR yes 54302256
chr17 40560175 40560183 RHOXF1 JASPAR yes 54302257
chr17 40560175 40560184 PITX3 JASPAR yes 21240403
chr17 40560175 40560184 PITX3 JASPAR yes 54302258
chr17 40560175 40560189 RXRB JASPAR yes 21240404
chr17 40560175 40560189 RXRG JASPAR yes 21240405
chr17 40560175 40560189 RXRB JASPAR yes 54302259
chr17 40560175 40560189 RXRG JASPAR yes 54302260
chr17 40560183 40560196 SMAD2 JASPAR yes 21240406
chr17 40560183 40560196 SMAD2 JASPAR yes 54302261
chr17 40560183 40560200 RXRA JASPAR yes 21240407
chr17 40560183 40560200 RXRA JASPAR yes 54302262
chr17 40560185 40560193 MEIS3 JASPAR yes 21240408
chr17 40560185 40560193 MEIS3 JASPAR yes 54302263
chr17 40560214 40560226 NHLH1 JASPAR yes 21240409
chr17 40560214 40560226 NHLH1 JASPAR yes 54302264
chr17 40560215 40560225 NHLH1 JASPAR yes 21240410
chr17 40560215 40560225 NHLH1 JASPAR yes 54302265
chr17 40560220 40560231 STAT3 JASPAR yes 21240411
chr17 40560220 40560231 STAT3 JASPAR yes 54302266
chr17 40560221 40560236 FOXP1 JASPAR yes 21240412
chr17 40560221 40560236 FOXP1 JASPAR yes 54302267
chr17 40560224 40560231 NFATC2 JASPAR yes 21240413
chr17 40560224 40560231 NFATC2 JASPAR yes 54302268
chr17 40560224 40560235 FOXP2 JASPAR yes 21240414
chr17 40560224 40560235 FOXP2 JASPAR yes 54302269
chr17 40560225 40560233 FOXO3 JASPAR yes 21240415
chr17 40560225 40560233 FOXO3 JASPAR yes 54302270
chr17 40560226 40560235 SRY JASPAR yes 21240416
chr17 40560226 40560235 SRY JASPAR yes 54302271
chr17 40560234 40560240 ZNF354C JASPAR yes 21240417
chr17 40560234 40560240 ZNF354C JASPAR yes 54302272
chr17 40560239 40560245 SOX10 JASPAR yes 21240418
chr17 40560239 40560245 SOX10 JASPAR yes 54302273
chr17 40560251 40560272 ZNF263 JASPAR yes 21240419
chr17 40560251 40560272 ZNF263 JASPAR yes 54302274
chr17 40560255 40560269 GLIS2 JASPAR yes 21240420
chr17 40560255 40560269 GLIS2 JASPAR yes 54302275
chr17 40560275 40560285 MZF1 JASPAR yes 21240421
chr17 40560275 40560285 MZF1 JASPAR yes 54302276
chr17 40560278 40560297 CTCF JASPAR yes 21240422
chr17 40560278 40560297 CTCF JASPAR yes 54302277
chr17 40560280 40560301 ZNF263 JASPAR yes 21240423
chr17 40560280 40560301 ZNF263 JASPAR yes 54302278
chr17 40560283 40560304 ZNF263 JASPAR yes 21240424
chr17 40560283 40560304 ZNF263 JASPAR yes 54302279
chr17 40560297 40560317 RREB1 JASPAR yes 21240425
chr17 40560297 40560317 RREB1 JASPAR yes 54302280
chr17 40560301 40560311 SP1 JASPAR yes 21240426
chr17 40560301 40560311 SP1 JASPAR yes 54302281
chr17 40560306 40560319 TFAP2A JASPAR yes 21240427
chr17 40560306 40560319 TFAP2B JASPAR yes 21240428
chr17 40560306 40560319 TFAP2C JASPAR yes 21240429
chr17 40560306 40560319 TFAP2A JASPAR yes 54302282
chr17 40560306 40560319 TFAP2B JASPAR yes 54302283
chr17 40560306 40560319 TFAP2C JASPAR yes 54302284
chr17 40560335 40560350 HNF4A JASPAR yes 21240430
chr17 40560335 40560350 RUNX2 JASPAR yes 21240431
chr17 40560335 40560350 HNF4A JASPAR yes 54302285
chr17 40560335 40560350 RUNX2 JASPAR yes 54302286
chr17 40560343 40560360 BCL6B JASPAR yes 21240432
chr17 40560343 40560360 BCL6B JASPAR yes 54302287
chr17 40560352 40560360 GATA3 JASPAR yes 21240433
chr17 40560352 40560360 GATA3 JASPAR yes 54302288
chr17 40560374 40560395 IRF1 JASPAR yes 21240434
chr17 40560374 40560395 IRF1 JASPAR yes 54302289
chr17 40560378 40560393 PRDM1 JASPAR yes 21240435
chr17 40560378 40560393 PRDM1 JASPAR yes 54302290
chr17 40560387 40560406 REST JASPAR yes 21240436
chr17 40560387 40560406 REST JASPAR yes 54302291
chr17 40560394 40560399 TFAP2A TRANSFAC yes 21240437
chr17 40560394 40560399 TFAP2A TRANSFAC yes 54302292
chr17 40560394 40560400 MZF1 JASPAR yes 21240438
chr17 40560394 40560400 MZF1 JASPAR yes 54302293
chr17 40560407 40560419 PROX1 JASPAR yes 21240439
chr17 40560407 40560419 PROX1 JASPAR yes 54302294
chr17 40560422 40560426 H1TF2 TRANSFAC yes 21240440
chr17 40560422 40560426 NFE TRANSFAC yes 21240441
chr17 40560422 40560426 SRF TRANSFAC yes 21240442
chr17 40560422 40560426 H1TF2 TRANSFAC yes 54302295
chr17 40560422 40560426 NFE TRANSFAC yes 54302296
chr17 40560422 40560426 SRF TRANSFAC yes 54302297
chr17 40560424 40560436 YY1 JASPAR yes 21240443
chr17 40560424 40560436 YY1 JASPAR yes 54302298
chr17 40560427 40560433 YY1 JASPAR yes 21240444
chr17 40560427 40560433 YY1 JASPAR yes 54302299
chr17 40560446 40560452 TCF4 TRANSFAC yes 21240445
chr17 40560446 40560452 TCF4 TRANSFAC yes 54302300
chr17 40560447 40560459 PKNOX1 JASPAR yes 21240446
chr17 40560447 40560459 TGIF2 JASPAR yes 21240447
chr17 40560447 40560459 PKNOX1 JASPAR yes 54302301
chr17 40560447 40560459 TGIF2 JASPAR yes 54302302
SNP sites on vista24819[chr17:40559988-40560462]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 40560050 rs201393181 T TA
TBP
4878478
chr17 40560136 rs9896896 C T
SP1
4878479
chr17 40560179 rs4796650 A T
GSC GSC2 OTX1 OTX2 PITX3 RHOXF1 RXRB RXRG ZNF143
4878480
chr17 40560197 rs138267964 G A
RXRA
4878481
Genes possibly regulated by vista24819[chr17:40559988-40560462]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 40465342 40540586 - STAT3 ENSG00000168610.10 40540586 0.74 0.99 15860 80598
chr17 40554470 40575535 - PTRF ENSG00000177469.12 40575535 0.76 0.99 15861 84927
chr17 40610862 40674629 + ATP6V0A1 ENSG00000033627.10 40610862 0.76 0.99 15862 49600
Expression level of Genes
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miRNAs possibly regulated by vista24819[chr17:40559988-40560462]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results