EnhancerDB
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  3. vista24841[chr17:41421158-41421352]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista24841[chr17:41421158-41421352]
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Tissue distribution of vista24841
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Transcription factor that possibly regulate vista24841[chr17:41421158-41421352]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 41421157 41421171 RORA JASPAR yes 21241395
chr17 41421157 41421171 RORA JASPAR yes 54336924
chr17 41421162 41421166 H1TF2 TRANSFAC yes 21241396
chr17 41421162 41421166 NFE TRANSFAC yes 21241397
chr17 41421162 41421166 SRF TRANSFAC yes 21241398
chr17 41421162 41421166 H1TF2 TRANSFAC yes 54336925
chr17 41421162 41421166 NFE TRANSFAC yes 54336926
chr17 41421162 41421166 SRF TRANSFAC yes 54336927
chr17 41421169 41421172 MYB TRANSFAC yes 21241399
chr17 41421169 41421172 MYB TRANSFAC yes 54336928
chr17 41421207 41421211 YY1 TRANSFAC yes 21241400
chr17 41421207 41421211 YY1 TRANSFAC yes 54336929
chr17 41421236 41421248 GRHL1 JASPAR yes 21241401
chr17 41421236 41421248 GRHL1 JASPAR yes 54336930
chr17 41421237 41421247 TFCP2 JASPAR yes 21241402
chr17 41421237 41421247 TFCP2 JASPAR yes 54336931
chr17 41421252 41421259 NFATC2 JASPAR yes 21241403
chr17 41421252 41421259 NFATC2 JASPAR yes 54336932
chr17 41421300 41421310 MEF2A JASPAR yes 21241404
chr17 41421300 41421310 MEF2A JASPAR yes 54336933
chr17 41421310 41421313 MYB TRANSFAC yes 21241405
chr17 41421310 41421313 MYB TRANSFAC yes 54336934
chr17 41421326 41421336 TFCP2 JASPAR yes 21241406
chr17 41421326 41421336 TFCP2 JASPAR yes 54336935
chr17 41421331 41421341 HOXA13 JASPAR yes 21241407
chr17 41421331 41421341 HOXB13 JASPAR yes 21241408
chr17 41421331 41421341 HOXD13 JASPAR yes 21241409
chr17 41421331 41421341 HOXA13 JASPAR yes 54336936
chr17 41421331 41421341 HOXB13 JASPAR yes 54336937
chr17 41421331 41421341 HOXD13 JASPAR yes 54336938
chr17 41421345 41421349 TEAD2 TRANSFAC yes 21241410
chr17 41421345 41421349 TEAD2 TRANSFAC yes 54336939
SNP sites on vista24841[chr17:41421158-41421352]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 41421199 rs542649803 C T no 4882400
chr17 41421251 rs148382923 A G no 4882401
chr17 41421339 rs565300458 G A
HOXA13 HOXB13 HOXD13
4882402
Genes possibly regulated by vista24841[chr17:41421158-41421352]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 41322498 41363708 + NBR1 ENSG00000188554.9 41322498 0.63 0.99 15894 1340
chr17 41363854 41372061 + TMEM106A ENSG00000184988.4 41363854 0.89 1.0 15895 42696
chr17 41476327 41478505 + ARL4D ENSG00000175906.4 41476327 0.78 1.0 15896 45025
Expression level of Genes
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miRNAs possibly regulated by vista24841[chr17:41421158-41421352]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results