EnhancerDB
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  3. vista25106[chr17:48290532-48290619]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25106[chr17:48290532-48290619]
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Tissue distribution of vista25106
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Transcription factor that possibly regulate vista25106[chr17:48290532-48290619]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 48290333 48290781 CTCF UCSC Txn Factor no Conserved 108270673
chr17 48290534 48290547 NFKB1 JASPAR yes 21254121
chr17 48290534 48290547 NFKB2 JASPAR yes 21254122
chr17 48290534 48290547 NFKB1 JASPAR yes 54687621
chr17 48290534 48290547 NFKB2 JASPAR yes 54687622
chr17 48290535 48290546 NFKB1 JASPAR yes 21254123
chr17 48290535 48290546 NFKB1 JASPAR yes 54687623
chr17 48290536 48290541 ETS2 TRANSFAC yes 21254124
chr17 48290536 48290541 ETS2 TRANSFAC yes 54687624
chr17 48290536 48290546 NFKB1 JASPAR yes 21254125
chr17 48290536 48290546 RELA JASPAR yes 21254126
chr17 48290536 48290546 NFKB1 JASPAR yes 54687625
chr17 48290536 48290546 RELA JASPAR yes 54687626
chr17 48290536 48290547 NFKB1 JASPAR yes 21254127
chr17 48290536 48290547 NFKB1 JASPAR yes 54687627
chr17 48290550 48290561 NFKB1 JASPAR yes 21254128
chr17 48290550 48290561 NFKB1 JASPAR yes 54687628
chr17 48290550 48290563 NFKB1 JASPAR yes 21254129
chr17 48290550 48290563 NFKB2 JASPAR yes 21254130
chr17 48290550 48290563 NFKB1 JASPAR yes 54687629
chr17 48290550 48290563 NFKB2 JASPAR yes 54687630
chr17 48290551 48290561 NFKB1 JASPAR yes 21254131
chr17 48290551 48290561 RELA JASPAR yes 21254132
chr17 48290551 48290561 NFKB1 JASPAR yes 54687631
chr17 48290551 48290561 RELA JASPAR yes 54687632
chr17 48290551 48290562 NFKB1 JASPAR yes 21254133
chr17 48290551 48290562 NFKB1 JASPAR yes 54687633
chr17 48290569 48290574 ETS2 TRANSFAC yes 21254134
chr17 48290569 48290574 ETS2 TRANSFAC yes 54687634
chr17 48290593 48290613 ESR1 JASPAR yes 21254135
chr17 48290593 48290613 ESR1 JASPAR yes 54687635
chr17 48290598 48290618 ESR1 JASPAR yes 21254136
chr17 48290598 48290618 ESR1 JASPAR yes 54687636
chr17 48290607 48290622 RFX5 JASPAR yes 21254137
chr17 48290607 48290622 RFX5 JASPAR yes 54687637
chr17 48290611 48290626 RUNX2 JASPAR yes 21254138
chr17 48290611 48290626 RUNX2 JASPAR yes 54687638
chr17 48290617 48290623 SOX10 JASPAR yes 21254139
chr17 48290617 48290623 SOX10 JASPAR yes 54687639
SNP sites on vista25106[chr17:48290532-48290619]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 48290557 rs146824499 T TC
CTCF NFKB1 NFKB2 RELA
4921653
chr17 48290558 rs4999526 T C
CTCF NFKB1 NFKB2 RELA
4921654
chr17 48290558 rs528578045 T TCC
CTCF NFKB1 NFKB2 RELA
4921655
chr17 48290563 rs80201588 C A,G,T
CTCF NFKB1 NFKB2
4921656
chr17 48290565 rs527960011 T C
CTCF
4921657
Genes possibly regulated by vista25106[chr17:48290532-48290619]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 48187404 48207246 - SAMD14 ENSG00000167100.10 48207246 0.88 1.0 16026 16714
chr17 48211104 48227991 - PPP1R9B ENSG00000108819.9 48227991 0.74 1.0 16027 37459
chr17 48241575 48253292 + SGCA ENSG00000108823.11 48241575 0.88 1.0 16028 51043
chr17 48260650 48278993 - COL1A1 ENSG00000108821.9 48278993 0.95 0.99 16029 88461
chr17 48348767 48358844 + TMEM92 ENSG00000167105.3 48348767 0.95 1.0 16030 41852
Expression level of Genes
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miRNAs possibly regulated by vista25106[chr17:48290532-48290619]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results