EnhancerDB
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  3. vista25129[chr17:48996944-48997365]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25129[chr17:48996944-48997365]
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Tissue distribution of vista25129
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Transcription factor that possibly regulate vista25129[chr17:48996944-48997365]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 48996850 48997414 E2F1 UCSC Txn Factor no Conserved 108271822
chr17 48997031 48997431 RFX5 UCSC Txn Factor no Conserved 108271845
chr17 48996953 48996971 RARA JASPAR yes 21254970
chr17 48996953 48996971 RARA JASPAR yes 54734036
chr17 48996958 48996962 YY1 TRANSFAC yes 21254971
chr17 48996958 48996962 YY1 TRANSFAC yes 54734037
chr17 48996968 48996978 HOXA13 JASPAR yes 21254972
chr17 48996968 48996978 HOXB13 JASPAR yes 21254973
chr17 48996968 48996978 HOXD13 JASPAR yes 21254974
chr17 48996968 48996978 HOXA13 JASPAR yes 54734038
chr17 48996968 48996978 HOXB13 JASPAR yes 54734039
chr17 48996968 48996978 HOXD13 JASPAR yes 54734040
chr17 48997019 48997030 USF1 JASPAR yes 21254975
chr17 48997019 48997030 USF2 JASPAR yes 21254976
chr17 48997019 48997030 USF1 JASPAR yes 54734041
chr17 48997019 48997030 USF2 JASPAR yes 54734042
chr17 48997020 48997027 USF2 TRANSFAC yes 21254977
chr17 48997020 48997027 USF2 TRANSFAC yes 54734043
chr17 48997022 48997027 USF2 TRANSFAC yes 21254978
chr17 48997022 48997027 USF2 TRANSFAC yes 54734044
chr17 48997031 48997043 INSM1 JASPAR yes 21254979
chr17 48997031 48997043 INSM1 JASPAR yes 54734045
chr17 48997041 48997051 SP1 JASPAR yes 21254980
chr17 48997041 48997051 SP1 JASPAR yes 54734046
chr17 48997062 48997066 LFA1 TRANSFAC yes 21254981
chr17 48997062 48997066 LFA1 TRANSFAC yes 54734047
chr17 48997069 48997090 ZNF263 JASPAR yes 21254982
chr17 48997069 48997090 ZNF263 JASPAR yes 54734048
chr17 48997073 48997083 SP1 JASPAR yes 21254983
chr17 48997073 48997083 SP1 JASPAR yes 54734049
chr17 48997075 48997080 SP1 TRANSFAC yes 21254984
chr17 48997075 48997080 SP1 TRANSFAC yes 54734050
chr17 48997075 48997081 SP1 TRANSFAC yes 21254985
chr17 48997075 48997081 SP1 TRANSFAC yes 54734051
chr17 48997075 48997082 SP1 TRANSFAC yes 21254986
chr17 48997075 48997082 SP1 TRANSFAC yes 54734052
chr17 48997076 48997088 TFAP2A JASPAR yes 21254987
chr17 48997076 48997088 TFAP2B JASPAR yes 21254988
chr17 48997076 48997088 TFAP2C JASPAR yes 21254989
chr17 48997076 48997088 TFAP2A JASPAR yes 54734053
chr17 48997076 48997088 TFAP2B JASPAR yes 54734054
chr17 48997076 48997088 TFAP2C JASPAR yes 54734055
chr17 48997078 48997087 TFAP2A JASPAR yes 21254990
chr17 48997078 48997087 TFAP2A JASPAR yes 54734056
chr17 48997116 48997127 ESRRA JASPAR yes 21254991
chr17 48997116 48997127 ESRRB JASPAR yes 21254992
chr17 48997116 48997127 ESRRA JASPAR yes 54734057
chr17 48997116 48997127 ESRRB JASPAR yes 54734058
chr17 48997120 48997135 RUNX2 JASPAR yes 21254993
chr17 48997120 48997135 RUNX2 JASPAR yes 54734059
chr17 48997127 48997137 TBX21 JASPAR yes 21254994
chr17 48997127 48997137 TBX21 JASPAR yes 54734060
chr17 48997127 48997138 TBX20 JASPAR yes 21254995
chr17 48997127 48997138 TBX2 JASPAR yes 21254996
chr17 48997127 48997138 TBX20 JASPAR yes 54734061
chr17 48997127 48997138 TBX2 JASPAR yes 54734062
chr17 48997127 48997140 EOMES JASPAR yes 21254997
chr17 48997127 48997140 EOMES JASPAR yes 54734063
chr17 48997128 48997136 MGA JASPAR yes 21254998
chr17 48997128 48997136 MGA JASPAR yes 54734064
chr17 48997128 48997138 TBR1 JASPAR yes 21254999
chr17 48997128 48997138 TBR1 JASPAR yes 54734065
chr17 48997180 48997195 JUND JASPAR yes 21255000
chr17 48997180 48997195 JUND JASPAR yes 54734066
chr17 48997181 48997194 JUN JASPAR yes 21255001
chr17 48997181 48997194 JUN JASPAR yes 54734067
chr17 48997182 48997196 BATF3 JASPAR yes 21255002
chr17 48997182 48997196 BATF3 JASPAR yes 54734068
chr17 48997183 48997195 JDP2 JASPAR yes 21255003
chr17 48997183 48997195 JDP2 JASPAR yes 54734069
chr17 48997189 48997200 NRL JASPAR yes 21255004
chr17 48997189 48997200 NRL JASPAR yes 54734070
chr17 48997190 48997209 RFX2 JASPAR yes 21255005
chr17 48997190 48997209 RFX2 JASPAR yes 54734071
chr17 48997194 48997210 RFX2 JASPAR yes 21255006
chr17 48997194 48997210 RFX3 JASPAR yes 21255007
chr17 48997194 48997210 RFX4 JASPAR yes 21255008
chr17 48997194 48997210 RFX5 JASPAR yes 21255009
chr17 48997194 48997210 RFX2 JASPAR yes 54734072
chr17 48997194 48997210 RFX3 JASPAR yes 54734073
chr17 48997194 48997210 RFX4 JASPAR yes 54734074
chr17 48997194 48997210 RFX5 JASPAR yes 54734075
chr17 48997195 48997214 RFX2 JASPAR yes 21255010
chr17 48997195 48997214 RFX2 JASPAR yes 54734076
chr17 48997224 48997228 LFA1 TRANSFAC yes 21255011
chr17 48997224 48997228 LFA1 TRANSFAC yes 54734077
chr17 48997238 48997244 MZF1 JASPAR yes 21255012
chr17 48997238 48997244 MZF1 JASPAR yes 54734078
chr17 48997246 48997261 PRDM1 JASPAR yes 21255013
chr17 48997246 48997261 STAT2 JASPAR yes 21255014
chr17 48997246 48997261 PRDM1 JASPAR yes 54734079
chr17 48997246 48997261 STAT2 JASPAR yes 54734080
chr17 48997247 48997261 STAT1 JASPAR yes 21255015
chr17 48997247 48997261 STAT1 JASPAR yes 54734081
chr17 48997255 48997261 SOX10 JASPAR yes 21255016
chr17 48997255 48997261 SOX10 JASPAR yes 54734082
chr17 48997261 48997276 HNF4A JASPAR yes 21255017
chr17 48997261 48997276 HNF4A JASPAR yes 54734083
chr17 48997262 48997276 NR2F1 JASPAR yes 21255018
chr17 48997262 48997276 NR2F1 JASPAR yes 54734084
chr17 48997262 48997277 HNF4G JASPAR yes 21255019
chr17 48997262 48997277 HNF4G JASPAR yes 54734085
chr17 48997272 48997291 RFX2 JASPAR yes 21255020
chr17 48997272 48997291 RFX2 JASPAR yes 54734086
chr17 48997276 48997292 RFX2 JASPAR yes 21255021
chr17 48997276 48997292 RFX3 JASPAR yes 21255022
chr17 48997276 48997292 RFX4 JASPAR yes 21255023
chr17 48997276 48997292 RFX5 JASPAR yes 21255024
chr17 48997276 48997292 RFX2 JASPAR yes 54734087
chr17 48997276 48997292 RFX3 JASPAR yes 54734088
chr17 48997276 48997292 RFX4 JASPAR yes 54734089
chr17 48997276 48997292 RFX5 JASPAR yes 54734090
chr17 48997277 48997286 NFIX JASPAR yes 21255025
chr17 48997277 48997286 NFIX JASPAR yes 54734091
chr17 48997277 48997296 RFX2 JASPAR yes 21255026
chr17 48997277 48997296 RFX2 JASPAR yes 54734092
chr17 48997279 48997285 NFIC JASPAR yes 21255027
chr17 48997279 48997285 NFIC JASPAR yes 54734093
chr17 48997291 48997296 SP1 TRANSFAC yes 21255028
chr17 48997291 48997296 SP1 TRANSFAC yes 54734094
chr17 48997301 48997306 SP1 TRANSFAC yes 21255029
chr17 48997301 48997306 SP1 TRANSFAC yes 54734095
chr17 48997302 48997307 SP1 TRANSFAC yes 21255030
chr17 48997302 48997307 SP1 TRANSFAC yes 54734096
chr17 48997304 48997324 RREB1 JASPAR yes 21255031
chr17 48997304 48997324 RREB1 JASPAR yes 54734097
chr17 48997306 48997315 HIC2 JASPAR yes 21255032
chr17 48997306 48997315 HIC2 JASPAR yes 54734098
chr17 48997307 48997316 NFIX JASPAR yes 21255033
chr17 48997307 48997316 NFIX JASPAR yes 54734099
chr17 48997308 48997314 NFIC JASPAR yes 21255034
chr17 48997308 48997314 NFIC JASPAR yes 54734100
chr17 48997317 48997322 SP1 TRANSFAC yes 21255035
chr17 48997317 48997322 SP1 TRANSFAC yes 54734101
chr17 48997319 48997324 TFAP2A TRANSFAC yes 21255036
chr17 48997319 48997324 TFAP2A TRANSFAC yes 54734102
chr17 48997319 48997325 MZF1 JASPAR yes 21255037
chr17 48997319 48997325 MZF1 JASPAR yes 54734103
chr17 48997321 48997326 ETS2 TRANSFAC yes 21255038
chr17 48997321 48997326 ETS2 TRANSFAC yes 54734104
chr17 48997340 48997355 SOX21 JASPAR yes 21255039
chr17 48997340 48997355 SOX21 JASPAR yes 54734105
SNP sites on vista25129[chr17:48996944-48997365]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 48997108 rs9915845 C T
E2F1 RFX5
4926961
chr17 48997131 rs573185126 G A
E2F1 EOMES MGA RFX5 RUNX2 TBR1 TBX2 TBX20 TBX21
4926962
chr17 48997225 rs114300964 G A
E2F1 LFA1 RFX5
4926963
chr17 48997312 rs542436074 G A
E2F1 HIC2 NFIC NFIX RFX5 RREB1
4926964
Genes possibly regulated by vista25129[chr17:48996944-48997365]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 48912011 48919709 + WFIKKN2 ENSG00000173714.7 48912011 1.0 1.0 16045 15067
chr17 48939584 48945339 - TOB1 ENSG00000141232.4 48945339 0.81 1.0 16046 48395
Expression level of Genes
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miRNAs possibly regulated by vista25129[chr17:48996944-48997365]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results