EnhancerDB
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  3. vista25184[chr17:53497202-53497618]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25184[chr17:53497202-53497618]
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Tissue distribution of vista25184
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Transcription factor that possibly regulate vista25184[chr17:53497202-53497618]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 53497401 53500397 POLR2A UCSC Txn Factor no Conserved 108272990
chr17 53497401 53500397 POLR2A UCSC Txn Factor no Conserved 108272991
chr17 53497450 53497688 SPI1 UCSC Txn Factor no Conserved 108272994
chr17 53497479 53497729 RUNX3 UCSC Txn Factor no Conserved 108272998
chr17 53497245 53497260 MEF2A JASPAR yes 21257284
chr17 53497246 53497261 MEF2C JASPAR yes 21257285
chr17 53497246 53497267 IRF1 JASPAR yes 21257286
chr17 53497247 53497259 MEF2A JASPAR yes 21257287
chr17 53497247 53497259 MEF2B JASPAR yes 21257288
chr17 53497247 53497259 MEF2D JASPAR yes 21257289
chr17 53497249 53497253 YY1 TRANSFAC yes 21257290
chr17 53497268 53497286 E2F3 JASPAR yes 21257291
chr17 53497281 53497292 PHOX2A JASPAR yes 21257292
chr17 53497281 53497292 PROP1 JASPAR yes 21257293
chr17 53497287 53497291 YY1 TRANSFAC yes 21257294
chr17 53497294 53497308 POU1F1 JASPAR yes 21257295
chr17 53497305 53497310 ETS2 TRANSFAC yes 21257296
chr17 53497330 53497345 HNF1A JASPAR yes 21257297
chr17 53497331 53497347 POU4F2 JASPAR yes 21257298
chr17 53497331 53497347 POU4F3 JASPAR yes 21257299
chr17 53497334 53497344 GSX2 JASPAR yes 21257300
chr17 53497334 53497344 HOXB2 JASPAR yes 21257301
chr17 53497334 53497344 HOXB3 JASPAR yes 21257302
chr17 53497334 53497344 MNX1 JASPAR yes 21257303
chr17 53497334 53497344 POU6F1 JASPAR yes 21257304
chr17 53497334 53497345 HOXA10 JASPAR yes 21257305
chr17 53497335 53497343 LMX1A JASPAR yes 21257306
chr17 53497335 53497343 LMX1B JASPAR yes 21257307
chr17 53497335 53497343 NKX6-1 JASPAR yes 21257308
chr17 53497335 53497343 NKX6-2 JASPAR yes 21257309
chr17 53497335 53497343 VAX1 JASPAR yes 21257310
chr17 53497335 53497343 VAX2 JASPAR yes 21257311
chr17 53497335 53497343 VSX1 JASPAR yes 21257312
chr17 53497335 53497343 VSX2 JASPAR yes 21257313
chr17 53497335 53497351 POU4F2 JASPAR yes 21257314
chr17 53497354 53497369 MAFK JASPAR yes 21257315
chr17 53497380 53497400 RREB1 JASPAR yes 21257316
chr17 53497404 53497407 MYB TRANSFAC yes 21257317
chr17 53497405 53497420 SOX21 JASPAR yes 21257318
chr17 53497413 53497416 MYB TRANSFAC yes 21257319
chr17 53497433 53497438 MYB TRANSFAC yes 21257320
chr17 53497440 53497460 RREB1 JASPAR yes 21257321
chr17 53497443 53497455 FOXI1 JASPAR yes 21257322
chr17 53497443 53497458 FOXP1 JASPAR yes 21257323
chr17 53497444 53497456 FOXC2 JASPAR yes 21257324
chr17 53497446 53497457 FOXA1 JASPAR yes 21257325
chr17 53497447 53497462 FOXP1 JASPAR yes 21257326
chr17 53497448 53497459 FOXP2 JASPAR yes 21257327
chr17 53497448 53497460 FOXC2 JASPAR yes 21257328
chr17 53497448 53497463 STAT2 JASPAR yes 21257329
chr17 53497449 53497464 FOXP1 JASPAR yes 21257330
chr17 53497451 53497466 FOXP1 JASPAR yes 21257331
chr17 53497455 53497469 IRF7 JASPAR yes 21257332
chr17 53497458 53497468 MEF2A JASPAR yes 21257333
chr17 53497482 53497500 RARA JASPAR yes 21257334
chr17 53497501 53497519 SRF JASPAR yes 21257335
chr17 53497512 53497517 ETS2 TRANSFAC yes 21257336
chr17 53497512 53497520 EHF JASPAR yes 21257337
chr17 53497519 53497523 LFA1 TRANSFAC yes 21257338
chr17 53497533 53497548 SOX21 JASPAR yes 21257339
chr17 53497533 53497549 SOX4 JASPAR yes 21257340
chr17 53497550 53497561 FOXP2 JASPAR yes 21257341
chr17 53497551 53497559 FOXO3 JASPAR yes 21257342
chr17 53497552 53497566 SPI1 JASPAR yes 21257343
chr17 53497552 53497566 SPIC JASPAR yes 21257344
chr17 53497553 53497566 ELF1 JASPAR yes 21257345
chr17 53497555 53497566 ELF5 JASPAR yes 21257346
chr17 53497556 53497566 GABPA JASPAR yes 21257347
chr17 53497556 53497567 FLI1 JASPAR yes 21257348
chr17 53497574 53497595 IRF1 JASPAR yes 21257349
chr17 53497578 53497593 STAT2 JASPAR yes 21257350
chr17 53497578 53497596 IRF2 JASPAR yes 21257351
chr17 53497579 53497591 IRF1 JASPAR yes 21257352
chr17 53497587 53497607 RREB1 JASPAR yes 21257353
chr17 53497596 53497605 RUNX2 JASPAR yes 21257354
chr17 53497596 53497606 RUNX3 JASPAR yes 21257355
SNP sites on vista25184[chr17:53497202-53497618]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 53497204 rs28390137 C T no 4939094
chr17 53497246 rs28414540 C T
IRF1 MEF2A MEF2C
4939095
chr17 53497255 rs576402625 T G
IRF1 MEF2A MEF2B MEF2C MEF2D
4939096
chr17 53497341 rs141184232 TAAA T
GSX2 HNF1A HOXA10 HOXB2 HOXB3 LMX1A LMX1B MNX1 NKX6-1 NKX6-2 POU4F2 POU4F3 POU6F1 VAX1 VAX2 VSX1 VSX2
4939097
chr17 53497341 rs751454392 TAAA T
GSX2 HNF1A HOXA10 HOXB2 HOXB3 LMX1A LMX1B MNX1 NKX6-1 NKX6-2 POU4F2 POU4F3 POU6F1 VAX1 VAX2 VSX1 VSX2
4939098
chr17 53497398 rs537440193 GTTGTT G
RREB1
4939099
chr17 53497452 rs533778756 GT G
FOXA1 FOXC2 FOXI1 FOXP1 FOXP2 POLR2A RREB1 SPI1 STAT2
4939100
chr17 53497596 rs72836852 C T
IRF2 POLR2A RREB1 RUNX2 RUNX3 SPI1
4939101
chr17 53497604 rs181373362 A C
POLR2A RREB1 RUNX2 RUNX3 SPI1
4939102
Genes possibly regulated by vista25184[chr17:53497202-53497618]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 53469974 53499353 - MMD ENSG00000108960.3 53499353 0.74 0.98 16061 98265
Expression level of Genes
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miRNAs possibly regulated by vista25184[chr17:53497202-53497618]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results