EnhancerDB
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  3. vista25235[chr17:55540558-55540950]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25235[chr17:55540558-55540950]
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Tissue distribution of vista25235
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Transcription factor that possibly regulate vista25235[chr17:55540558-55540950]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 55539307 55541179 POLR2A UCSC Txn Factor no Conserved 108274069
chr17 55540487 55540927 NFIC UCSC Txn Factor no Conserved 108274091
chr17 55540513 55540935 RELA UCSC Txn Factor no Conserved 108274099
chr17 55540521 55540889 RUNX3 UCSC Txn Factor no Conserved 108274101
chr17 55540548 55540853 BATF UCSC Txn Factor no Conserved 108274113
chr17 55540552 55540880 ATF2 UCSC Txn Factor no Conserved 108274116
chr17 55540544 55540559 FOXP1 JASPAR yes 21259758
chr17 55540544 55540559 FOXP1 JASPAR yes 54957419
chr17 55540578 55540589 E2F6 JASPAR yes 21259759
chr17 55540578 55540589 E2F6 JASPAR yes 54957422
chr17 55540582 55540587 ETS2 TRANSFAC yes 21259760
chr17 55540582 55540587 ETS2 TRANSFAC yes 54957423
chr17 55540622 55540642 RREB1 JASPAR yes 21259761
chr17 55540622 55540642 RREB1 JASPAR yes 54957424
chr17 55540625 55540635 ZNF740 JASPAR yes 21259762
chr17 55540625 55540635 ZNF740 JASPAR yes 54957425
chr17 55540625 55540645 RREB1 JASPAR yes 21259763
chr17 55540625 55540645 RREB1 JASPAR yes 54957426
chr17 55540633 55540638 SP1 TRANSFAC yes 21259764
chr17 55540633 55540638 SP1 TRANSFAC yes 54957427
chr17 55540634 55540644 SP1 JASPAR yes 21259765
chr17 55540634 55540644 SP1 JASPAR yes 54957428
chr17 55540635 55540645 SP1 JASPAR yes 21259766
chr17 55540635 55540645 SP1 JASPAR yes 54957429
chr17 55540636 55540640 LFA1 TRANSFAC yes 21259767
chr17 55540636 55540640 LFA1 TRANSFAC yes 54957430
chr17 55540639 55540657 ESR1 JASPAR yes 21259768
chr17 55540639 55540657 ESR1 JASPAR yes 54957431
chr17 55540640 55540658 RARA JASPAR yes 21259769
chr17 55540640 55540658 RARA JASPAR yes 54957432
chr17 55540642 55540650 FOXC1 JASPAR yes 21259770
chr17 55540642 55540650 FOXC1 JASPAR yes 54957433
chr17 55540654 55540660 SOX10 JASPAR yes 21259771
chr17 55540654 55540660 SOX10 JASPAR yes 54957434
chr17 55540670 55540674 H1TF2 TRANSFAC yes 21259772
chr17 55540670 55540674 NFE TRANSFAC yes 21259773
chr17 55540670 55540674 SRF TRANSFAC yes 21259774
chr17 55540670 55540674 H1TF2 TRANSFAC yes 54957435
chr17 55540670 55540674 NFE TRANSFAC yes 54957436
chr17 55540670 55540674 SRF TRANSFAC yes 54957437
chr17 55540670 55540676 NFYC TRANSFAC yes 21259775
chr17 55540670 55540676 NFYC TRANSFAC yes 54957438
chr17 55540675 55540686 CEBPA JASPAR yes 21259776
chr17 55540675 55540686 CEBPA JASPAR yes 54957439
chr17 55540707 55540712 TFAP2A TRANSFAC yes 21259777
chr17 55540707 55540712 TFAP2A TRANSFAC yes 54957440
chr17 55540707 55540713 MZF1 JASPAR yes 21259778
chr17 55540707 55540713 MZF1 JASPAR yes 54957441
chr17 55540708 55540718 REL JASPAR yes 21259779
chr17 55540708 55540718 REL JASPAR yes 54957442
chr17 55540708 55540719 NFKB1 JASPAR yes 21259780
chr17 55540708 55540719 NFKB1 JASPAR yes 54957443
chr17 55540709 55540719 NFKB1 JASPAR yes 21259781
chr17 55540709 55540719 RELA JASPAR yes 21259782
chr17 55540709 55540719 REL JASPAR yes 21259783
chr17 55540709 55540719 NFKB1 JASPAR yes 54957444
chr17 55540709 55540719 RELA JASPAR yes 54957445
chr17 55540709 55540719 REL JASPAR yes 54957446
chr17 55540709 55540720 NFKB1 JASPAR yes 21259784
chr17 55540709 55540720 NFKB1 JASPAR yes 54957447
chr17 55540710 55540720 RELA JASPAR yes 21259785
chr17 55540710 55540720 REL JASPAR yes 21259786
chr17 55540710 55540720 RELA JASPAR yes 54957448
chr17 55540710 55540720 REL JASPAR yes 54957449
chr17 55540723 55540729 JUN TRANSFAC yes 21259787
chr17 55540723 55540729 JUN TRANSFAC yes 54957450
chr17 55540762 55540776 GLIS2 JASPAR yes 21259788
chr17 55540762 55540776 GLIS3 JASPAR yes 21259789
chr17 55540762 55540776 GLIS2 JASPAR yes 54957451
chr17 55540762 55540776 GLIS3 JASPAR yes 54957452
chr17 55540767 55540775 MEIS2 JASPAR yes 21259790
chr17 55540767 55540775 MEIS3 JASPAR yes 21259791
chr17 55540767 55540775 MEIS2 JASPAR yes 54957453
chr17 55540767 55540775 MEIS3 JASPAR yes 54957454
chr17 55540768 55540772 NFE TRANSFAC yes 21259792
chr17 55540768 55540772 NFE TRANSFAC yes 54957455
chr17 55540768 55540775 MEIS1 JASPAR yes 21259793
chr17 55540768 55540775 MEIS1 JASPAR yes 54957456
chr17 55540789 55540793 NFE TRANSFAC yes 21259794
chr17 55540789 55540793 NFE TRANSFAC yes 54957457
chr17 55540800 55540811 E2F6 JASPAR yes 21259795
chr17 55540800 55540811 E2F6 JASPAR yes 54957458
chr17 55540806 55540820 PLAG1 JASPAR yes 21259796
chr17 55540806 55540820 PLAG1 JASPAR yes 54957459
chr17 55540807 55540813 MZF1 JASPAR yes 21259797
chr17 55540807 55540813 MZF1 JASPAR yes 54957460
chr17 55540834 55540838 NFE TRANSFAC yes 21259798
chr17 55540834 55540838 NFE TRANSFAC yes 54957461
chr17 55540839 55540857 ESR1 JASPAR yes 21259799
chr17 55540839 55540857 ESR1 JASPAR yes 54957462
chr17 55540871 55540877 SP1 TRANSFAC yes 21259800
chr17 55540871 55540877 SP1 TRANSFAC yes 54957463
chr17 55540871 55540881 SP1 JASPAR yes 21259801
chr17 55540871 55540881 SP1 JASPAR yes 54957464
chr17 55540873 55540878 SP1 TRANSFAC yes 21259802
chr17 55540873 55540878 SP1 TRANSFAC yes 54957465
chr17 55540899 55540905 MZF1 JASPAR yes 21259803
chr17 55540899 55540905 MZF1 JASPAR yes 54957466
chr17 55540907 55540918 TFAP2A JASPAR yes 21259804
chr17 55540907 55540918 TFAP2B JASPAR yes 21259805
chr17 55540907 55540918 TFAP2C JASPAR yes 21259806
chr17 55540907 55540918 TFAP2A JASPAR yes 54957467
chr17 55540907 55540918 TFAP2B JASPAR yes 54957468
chr17 55540907 55540918 TFAP2C JASPAR yes 54957469
chr17 55540908 55540917 TFAP2A JASPAR yes 21259807
chr17 55540908 55540917 TFAP2A JASPAR yes 54957470
chr17 55540927 55540933 MZF1 JASPAR yes 21259808
chr17 55540927 55540933 MZF1 JASPAR yes 54957471
chr17 55540948 55540958 GCM2 JASPAR yes 21259809
chr17 55540948 55540958 GCM2 JASPAR yes 54957472
chr17 55540948 55540959 GCM1 JASPAR yes 21259810
chr17 55540948 55540959 GCM1 JASPAR yes 54957473
SNP sites on vista25235[chr17:55540558-55540950]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 55540570 rs74649392 G T
ATF2 BATF NFIC POLR2A RELA RUNX3
4949990
chr17 55540881 rs187867897 C T
NFIC POLR2A RELA RUNX3 SP1
4949991
Genes possibly regulated by vista25235[chr17:55540558-55540950]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista25235[chr17:55540558-55540950]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results