EnhancerDB
  1. Home
  2. Enhancers
  3. vista25248[chr17:55749375-55749748]
View enhancers around input chromosomal region
Back to top

Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25248[chr17:55749375-55749748]
Back to top
Tissue distribution of vista25248
Back to top
Transcription factor that possibly regulate vista25248[chr17:55749375-55749748]
Back to top
Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 55749236 55749995 CTCF UCSC Txn Factor no Conserved 108274333
chr17 55749303 55749583 SMC3 UCSC Txn Factor no Conserved 108274345
chr17 55749305 55749569 RAD21 UCSC Txn Factor no Conserved 108274347
chr17 55749376 55749395 REST JASPAR yes 21260393
chr17 55749392 55749397 SP1 TRANSFAC yes 21260394
chr17 55749393 55749398 SP1 TRANSFAC yes 21260395
chr17 55749396 55749414 NR3C1 JASPAR yes 21260396
chr17 55749432 55749451 CTCF JASPAR yes 21260397
chr17 55749445 55749450 TFAP2A TRANSFAC yes 21260398
chr17 55749445 55749451 MZF1 JASPAR yes 21260399
chr17 55749457 55749474 RXRA JASPAR yes 21260400
chr17 55749461 55749465 NFE TRANSFAC yes 21260401
chr17 55749461 55749474 SMAD2 JASPAR yes 21260402
chr17 55749483 55749496 ZBTB18 JASPAR yes 21260403
chr17 55749489 55749509 ESR1 JASPAR yes 21260404
chr17 55749494 55749509 ESR2 JASPAR yes 21260405
chr17 55749519 55749524 MYC TRANSFAC yes 21260406
chr17 55749537 55749548 HOXA10 JASPAR yes 21260407
chr17 55749538 55749547 CDX1 JASPAR yes 21260408
chr17 55749538 55749548 HOXA13 JASPAR yes 21260409
chr17 55749538 55749548 HOXB13 JASPAR yes 21260410
chr17 55749538 55749548 HOXD13 JASPAR yes 21260411
chr17 55749609 55749613 YY1 TRANSFAC yes 21260412
chr17 55749611 55749623 PBX1 JASPAR yes 21260413
chr17 55749617 55749638 ZNF263 JASPAR yes 21260414
chr17 55749620 55749641 ZNF263 JASPAR yes 21260415
chr17 55749634 55749644 MZF1 JASPAR yes 21260416
chr17 55749666 55749677 CEBPA JASPAR yes 21260417
chr17 55749667 55749677 CEBPB JASPAR yes 21260418
chr17 55749667 55749677 CEBPD JASPAR yes 21260419
chr17 55749667 55749677 CEBPE JASPAR yes 21260420
chr17 55749667 55749678 CEBPB JASPAR yes 21260421
chr17 55749670 55749680 RELA JASPAR yes 21260422
chr17 55749675 55749690 TFAP2C JASPAR yes 21260423
chr17 55749677 55749689 TFAP2A JASPAR yes 21260424
chr17 55749695 55749710 RUNX2 JASPAR yes 21260425
chr17 55749696 55749705 RUNX2 JASPAR yes 21260426
chr17 55749696 55749706 RUNX3 JASPAR yes 21260427
chr17 55749708 55749714 MZF1 JASPAR yes 21260428
chr17 55749716 55749728 TEAD1 JASPAR yes 21260429
chr17 55749727 55749746 RFX2 JASPAR yes 21260430
chr17 55749729 55749744 RFX5 JASPAR yes 21260431
chr17 55749732 55749741 NFIX JASPAR yes 21260432
chr17 55749734 55749740 NFIC JASPAR yes 21260433
SNP sites on vista25248[chr17:55749375-55749748]
Back to top
chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 55749383 rs62060660 G A
CTCF RAD21 REST SMC3
4952348
chr17 55749432 rs569771884 G C
CTCF RAD21 SMC3
4952349
chr17 55749485 rs150994966 G A
CTCF RAD21 SMC3 ZBTB18
4952350
chr17 55749501 rs201456066 CTT C
CTCF ESR1 ESR2 RAD21 SMC3
4952351
chr17 55749690 rs140836290 G A
CTCF TFAP2C
4952352
chr17 55749731 rs575333061 C T
CTCF RFX2 RFX5
4952353
chr17 55749732 rs543942966 G A
CTCF NFIX RFX2 RFX5
4952354
Genes possibly regulated by vista25248[chr17:55749375-55749748]
Back to top
Details of Genes
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 55821842 55822673 - AC007431.1 ENSG00000166329.2 55822673 0.96 0.0 16073 27075
Expression level of Genes
Back to top
miRNAs possibly regulated by vista25248[chr17:55749375-55749748]
Back to top
Details of miRNAs
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
Back to top
No results