EnhancerDB
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  3. vista25252[chr17:55860194-55860305]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25252[chr17:55860194-55860305]
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Tissue distribution of vista25252
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Transcription factor that possibly regulate vista25252[chr17:55860194-55860305]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 55860201 55860206 SP1 TRANSFAC yes 21260609
chr17 55860201 55860206 SP1 TRANSFAC yes 54988909
chr17 55860205 55860226 ZNF263 JASPAR yes 21260610
chr17 55860205 55860226 ZNF263 JASPAR yes 54988910
chr17 55860206 55860213 CEBPA TRANSFAC yes 21260611
chr17 55860206 55860213 CEBPA TRANSFAC yes 54988911
chr17 55860209 55860218 HiNF-C TRANSFAC yes 21260612
chr17 55860209 55860218 HiNF-C TRANSFAC yes 54988912
chr17 55860209 55860219 SP1 JASPAR yes 21260613
chr17 55860209 55860219 SP1 JASPAR yes 54988913
chr17 55860210 55860216 SP1 TRANSFAC yes 21260614
chr17 55860210 55860216 SP1 TRANSFAC yes 54988914
chr17 55860211 55860216 SP1 TRANSFAC yes 21260615
chr17 55860211 55860216 SP1 TRANSFAC yes 54988915
chr17 55860211 55860222 E2F4 JASPAR yes 21260616
chr17 55860211 55860222 E2F4 JASPAR yes 54988916
chr17 55860212 55860217 SP1 TRANSFAC yes 21260617
chr17 55860212 55860217 SP1 TRANSFAC yes 54988917
chr17 55860212 55860218 SP1 TRANSFAC yes 21260618
chr17 55860212 55860218 SP1 TRANSFAC yes 54988918
chr17 55860216 55860221 ETS2 TRANSFAC yes 21260619
chr17 55860216 55860221 ETS2 TRANSFAC yes 54988919
chr17 55860219 55860229 GSC2 JASPAR yes 21260620
chr17 55860219 55860229 GSC JASPAR yes 21260621
chr17 55860219 55860229 GSC2 JASPAR yes 54988920
chr17 55860219 55860229 GSC JASPAR yes 54988921
chr17 55860220 55860228 OTX1 JASPAR yes 21260622
chr17 55860220 55860228 OTX2 JASPAR yes 21260623
chr17 55860220 55860228 OTX1 JASPAR yes 54988922
chr17 55860220 55860228 OTX2 JASPAR yes 54988923
chr17 55860220 55860229 PITX3 JASPAR yes 21260624
chr17 55860220 55860229 PITX3 JASPAR yes 54988924
chr17 55860230 55860239 SNAI2 JASPAR yes 21260625
chr17 55860230 55860239 SNAI2 JASPAR yes 54988925
chr17 55860231 55860236 USF2 TRANSFAC yes 21260626
chr17 55860231 55860236 USF2 TRANSFAC yes 54988926
chr17 55860236 55860247 E2F6 JASPAR yes 21260627
chr17 55860236 55860247 E2F6 JASPAR yes 54988927
chr17 55860237 55860258 ZNF263 JASPAR yes 21260628
chr17 55860237 55860258 ZNF263 JASPAR yes 54988928
chr17 55860255 55860266 USF1 JASPAR yes 21260629
chr17 55860255 55860266 USF2 JASPAR yes 21260630
chr17 55860255 55860266 USF1 JASPAR yes 54988929
chr17 55860255 55860266 USF2 JASPAR yes 54988930
chr17 55860267 55860276 NKX2-8 JASPAR yes 21260631
chr17 55860267 55860276 NKX2-8 JASPAR yes 54988931
chr17 55860267 55860281 TCF7L2 JASPAR yes 21260632
chr17 55860267 55860281 TCF7L2 JASPAR yes 54988932
chr17 55860271 55860277 TCF1 TRANSFAC yes 21260633
chr17 55860271 55860277 TCF1 TRANSFAC yes 54988933
chr17 55860271 55860278 TCF4 TRANSFAC yes 21260634
chr17 55860271 55860278 TCF4 TRANSFAC yes 54988934
chr17 55860274 55860289 RUNX2 JASPAR yes 21260635
chr17 55860274 55860289 RUNX2 JASPAR yes 54988935
chr17 55860299 55860305 LEF1 TRANSFAC yes 21260636
chr17 55860299 55860305 SOX10 JASPAR yes 21260637
chr17 55860299 55860305 LEF1 TRANSFAC yes 54988936
chr17 55860299 55860305 SOX10 JASPAR yes 54988937
SNP sites on vista25252[chr17:55860194-55860305]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 55860209 rs73322366 G A
CEBPA HiNF-C SP1 ZNF263
4953196
chr17 55860217 rs117405202 G A
E2F4 ETS2 HiNF-C SP1 ZNF263
4953197
Genes possibly regulated by vista25252[chr17:55860194-55860305]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 55821842 55822673 - AC007431.1 ENSG00000166329.2 55822673 0.96 0.0 16073 62479
chr17 55916842 55927417 - MRPS23 ENSG00000181610.8 55927417 0.7 0.99 16074 32888
Expression level of Genes
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miRNAs possibly regulated by vista25252[chr17:55860194-55860305]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results