EnhancerDB
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  3. vista25254[chr17:55938337-55938724]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25254[chr17:55938337-55938724]
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Tissue distribution of vista25254
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Transcription factor that possibly regulate vista25254[chr17:55938337-55938724]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 55938154 55938530 RFX5 UCSC Txn Factor no Conserved 108274402
chr17 55938197 55938734 ESR1 UCSC Txn Factor no Conserved 108274405
chr17 55938225 55939062 TCF7L2 UCSC Txn Factor no Conserved 108274408
chr17 55938280 55939054 POLR2A UCSC Txn Factor no Conserved 108274412
chr17 55938334 55938804 GATA3 UCSC Txn Factor no Conserved 108274417
chr17 55938400 55938802 TCF12 UCSC Txn Factor no Conserved 108274433
chr17 55938402 55938762 EP300 UCSC Txn Factor no Conserved 108274435
chr17 55938500 55938740 FOXA1 UCSC Txn Factor no Conserved 108274447
chr17 55938507 55938736 FOXA2 UCSC Txn Factor no Conserved 108274448
chr17 55938360 55938370 RUNX3 JASPAR yes 21260656
chr17 55938399 55938404 ETS2 TRANSFAC yes 21260657
chr17 55938409 55938420 ESRRA JASPAR yes 21260658
chr17 55938409 55938420 ESRRB JASPAR yes 21260659
chr17 55938428 55938432 NFE TRANSFAC yes 21260660
chr17 55938445 55938456 FLI1 JASPAR yes 21260661
chr17 55938445 55938464 CTCF JASPAR yes 21260662
chr17 55938446 55938460 SPI1 JASPAR yes 21260663
chr17 55938446 55938460 SPIC JASPAR yes 21260664
chr17 55938449 55938456 SPIB JASPAR yes 21260665
chr17 55938472 55938476 NFE TRANSFAC yes 21260666
chr17 55938486 55938495 HiNF-C TRANSFAC yes 21260667
chr17 55938486 55938496 SP1 JASPAR yes 21260668
chr17 55938487 55938493 SP1 TRANSFAC yes 21260669
chr17 55938487 55938497 SP1 JASPAR yes 21260670
chr17 55938488 55938493 SP1 TRANSFAC yes 21260671
chr17 55938489 55938494 SP1 TRANSFAC yes 21260672
chr17 55938489 55938495 SP1 TRANSFAC yes 21260673
chr17 55938505 55938526 ZNF263 JASPAR yes 21260674
chr17 55938511 55938521 SP1 JASPAR yes 21260675
chr17 55938511 55938532 ZNF263 JASPAR yes 21260676
chr17 55938514 55938524 SP1 JASPAR yes 21260677
chr17 55938514 55938535 ZNF263 JASPAR yes 21260678
chr17 55938517 55938538 ZNF263 JASPAR yes 21260679
chr17 55938520 55938526 PEA3 TRANSFAC yes 21260680
chr17 55938520 55938541 ZNF263 JASPAR yes 21260681
chr17 55938521 55938529 EHF JASPAR yes 21260682
chr17 55938532 55938543 DMRT3 JASPAR yes 21260683
chr17 55938549 55938564 AR JASPAR yes 21260684
chr17 55938559 55938574 LEF1 JASPAR yes 21260685
chr17 55938560 55938574 TCF7L2 JASPAR yes 21260686
chr17 55938581 55938596 STAT1 JASPAR yes 21260687
chr17 55938583 55938594 STAT3 JASPAR yes 21260688
chr17 55938608 55938616 RHOXF1 JASPAR yes 21260689
chr17 55938615 55938625 MSC JASPAR yes 21260690
chr17 55938617 55938632 FOXA1 JASPAR yes 21260691
chr17 55938618 55938630 FOXI1 JASPAR yes 21260692
chr17 55938619 55938630 FOXP2 JASPAR yes 21260693
chr17 55938619 55938631 FOXC2 JASPAR yes 21260694
chr17 55938619 55938633 FOXF2 JASPAR yes 21260695
chr17 55938620 55938631 FOXC1 JASPAR yes 21260696
chr17 55938621 55938632 FOXA1 JASPAR yes 21260697
chr17 55938621 55938632 FOXH1 JASPAR yes 21260698
chr17 55938625 55938629 YY1 TRANSFAC yes 21260699
chr17 55938641 55938656 HSF1 JASPAR yes 21260700
chr17 55938663 55938673 RELA JASPAR yes 21260701
chr17 55938664 55938675 NFKB1 JASPAR yes 21260702
chr17 55938665 55938686 REST JASPAR yes 21260703
chr17 55938670 55938676 MZF1 JASPAR yes 21260704
chr17 55938676 55938687 NFKB1 JASPAR yes 21260705
chr17 55938691 55938702 NFE2L2 JASPAR yes 21260706
SNP sites on vista25254[chr17:55938337-55938724]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 55938637 rs375803668 G A
EP300 ESR1 FOXA1 FOXA2 GATA3 POLR2A TCF12 TCF7L2
4953729
Genes possibly regulated by vista25254[chr17:55938337-55938724]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 55916842 55927417 - MRPS23 ENSG00000181610.8 55927417 0.7 0.99 16074 89080
chr17 55938604 56032684 - CUEDC1 ENSG00000180891.8 56032684 0.72 1.0 16075 6040
Expression level of Genes
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miRNAs possibly regulated by vista25254[chr17:55938337-55938724]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results