EnhancerDB
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  3. vista25361[chr17:57904186-57904344]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25361[chr17:57904186-57904344]
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Tissue distribution of vista25361
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Transcription factor that possibly regulate vista25361[chr17:57904186-57904344]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 57904257 57904462 RUNX3 UCSC Txn Factor no Conserved 108277895
chr17 57904196 57904211 HSF1 JASPAR yes 21266417
chr17 57904196 57904211 HSF1 JASPAR yes 55086224
chr17 57904221 57904225 YY1 TRANSFAC yes 21266418
chr17 57904221 57904225 YY1 TRANSFAC yes 55086225
chr17 57904221 57904236 STAT1 JASPAR yes 21266419
chr17 57904221 57904236 STAT1 JASPAR yes 55086226
chr17 57904262 57904274 TAL1 JASPAR yes 21266420
chr17 57904262 57904274 TAL1 JASPAR yes 55086227
chr17 57904263 57904275 NHLH1 JASPAR yes 21266421
chr17 57904263 57904275 NHLH1 JASPAR yes 55086228
chr17 57904264 57904274 MSC JASPAR yes 21266422
chr17 57904264 57904274 MYF6 JASPAR yes 21266423
chr17 57904264 57904274 NHLH1 JASPAR yes 21266424
chr17 57904264 57904274 TFAP4 JASPAR yes 21266425
chr17 57904264 57904274 MSC JASPAR yes 55086229
chr17 57904264 57904274 MYF6 JASPAR yes 55086230
chr17 57904264 57904274 NHLH1 JASPAR yes 55086231
chr17 57904264 57904274 TFAP4 JASPAR yes 55086232
chr17 57904305 57904309 NFE TRANSFAC yes 21266426
chr17 57904305 57904309 NFE TRANSFAC yes 55086233
chr17 57904322 57904332 BHLHE40 JASPAR yes 21266427
chr17 57904322 57904332 CLOCK JASPAR yes 21266428
chr17 57904322 57904332 HEY1 JASPAR yes 21266429
chr17 57904322 57904332 MAX JASPAR yes 21266430
chr17 57904322 57904332 MNT JASPAR yes 21266431
chr17 57904322 57904332 BHLHE40 JASPAR yes 55086234
chr17 57904322 57904332 CLOCK JASPAR yes 55086235
chr17 57904322 57904332 HEY1 JASPAR yes 55086236
chr17 57904322 57904332 MAX JASPAR yes 55086237
chr17 57904322 57904332 MNT JASPAR yes 55086238
chr17 57904324 57904329 MYC TRANSFAC yes 21266432
chr17 57904324 57904329 USF1 TRANSFAC yes 21266433
chr17 57904324 57904329 USF2 TRANSFAC yes 21266434
chr17 57904324 57904329 MYC TRANSFAC yes 55086239
chr17 57904324 57904329 USF1 TRANSFAC yes 55086240
chr17 57904324 57904329 USF2 TRANSFAC yes 55086241
chr17 57904330 57904343 ZBTB18 JASPAR yes 21266435
chr17 57904330 57904343 ZBTB18 JASPAR yes 55086242
chr17 57904331 57904337 ZNF354C JASPAR yes 21266436
chr17 57904331 57904337 ZNF354C JASPAR yes 55086243
chr17 57904332 57904342 FIGLA JASPAR yes 21266437
chr17 57904332 57904342 FIGLA JASPAR yes 55086244
chr17 57904333 57904342 SNAI2 JASPAR yes 21266438
chr17 57904333 57904342 SNAI2 JASPAR yes 55086245
chr17 57904334 57904339 USF2 TRANSFAC yes 21266439
chr17 57904334 57904339 USF2 TRANSFAC yes 55086246
SNP sites on vista25361[chr17:57904186-57904344]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 57904302 rs115624974 A C
RUNX3
4962029
Genes possibly regulated by vista25361[chr17:57904186-57904344]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 57936851 57970304 - TUBD1 ENSG00000108423.10 57970304 0.67 0.99 16107 34040
chr17 57970447 58027925 + RPS6KB1 ENSG00000108443.9 57970447 0.59 0.98 16108 33897
Expression level of Genes
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miRNAs possibly regulated by vista25361[chr17:57904186-57904344]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr17 57918672 57918692 + hsa-miR-21-3p MIMAT0004494 57915291 0.13136644739433567 0.710898 0.678791 730
Expression level of miRNAs
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