EnhancerDB
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  3. vista25364[chr17:57907420-57907736]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25364[chr17:57907420-57907736]
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Tissue distribution of vista25364
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Transcription factor that possibly regulate vista25364[chr17:57907420-57907736]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 57905252 57907881 POLR2A UCSC Txn Factor no Conserved 108277933
chr17 57905252 57907881 POLR2A UCSC Txn Factor no Conserved 108277934
chr17 57905252 57907881 POLR2A UCSC Txn Factor no Conserved 108277935
chr17 57907415 57907425 GSX1 JASPAR yes 21266652
chr17 57907415 57907425 GSX2 JASPAR yes 21266653
chr17 57907415 57907425 GSX1 JASPAR yes 55086665
chr17 57907415 57907425 GSX2 JASPAR yes 55086666
chr17 57907416 57907424 LMX1A JASPAR yes 21266654
chr17 57907416 57907424 LMX1B JASPAR yes 21266655
chr17 57907416 57907424 NKX6-1 JASPAR yes 21266656
chr17 57907416 57907424 NKX6-2 JASPAR yes 21266657
chr17 57907416 57907424 VAX1 JASPAR yes 21266658
chr17 57907416 57907424 VAX2 JASPAR yes 21266659
chr17 57907416 57907424 VSX1 JASPAR yes 21266660
chr17 57907416 57907424 VSX2 JASPAR yes 21266661
chr17 57907416 57907424 LMX1A JASPAR yes 55086667
chr17 57907416 57907424 LMX1B JASPAR yes 55086668
chr17 57907416 57907424 NKX6-1 JASPAR yes 55086669
chr17 57907416 57907424 NKX6-2 JASPAR yes 55086670
chr17 57907416 57907424 VAX1 JASPAR yes 55086671
chr17 57907416 57907424 VAX2 JASPAR yes 55086672
chr17 57907416 57907424 VSX1 JASPAR yes 55086673
chr17 57907416 57907424 VSX2 JASPAR yes 55086674
chr17 57907416 57907429 DUXA JASPAR yes 21266662
chr17 57907416 57907429 DUXA JASPAR yes 55086675
chr17 57907417 57907428 DUX4 JASPAR yes 21266663
chr17 57907417 57907428 PHOX2A JASPAR yes 21266664
chr17 57907417 57907428 PROP1 JASPAR yes 21266665
chr17 57907417 57907428 DUX4 JASPAR yes 55086676
chr17 57907417 57907428 PHOX2A JASPAR yes 55086677
chr17 57907417 57907428 PROP1 JASPAR yes 55086678
chr17 57907424 57907435 HOXA10 JASPAR yes 21266666
chr17 57907424 57907435 HOXA10 JASPAR yes 55086679
chr17 57907425 57907436 CDX2 JASPAR yes 21266667
chr17 57907425 57907436 CDX2 JASPAR yes 55086680
chr17 57907428 57907432 TEAD2 TRANSFAC yes 21266668
chr17 57907428 57907432 TEAD2 TRANSFAC yes 55086681
chr17 57907430 57907433 MYB TRANSFAC yes 21266669
chr17 57907430 57907433 MYB TRANSFAC yes 55086682
chr17 57907437 57907441 LFA1 TRANSFAC yes 21266670
chr17 57907437 57907441 LFA1 TRANSFAC yes 55086683
chr17 57907468 57907472 NFE TRANSFAC yes 21266671
chr17 57907468 57907472 NFE TRANSFAC yes 55086684
chr17 57907469 57907474 GATA2 JASPAR yes 21266672
chr17 57907469 57907474 GATA2 JASPAR yes 55086685
chr17 57907472 57907492 RREB1 JASPAR yes 21266673
chr17 57907472 57907492 RREB1 JASPAR yes 55086686
chr17 57907480 57907485 SP1 TRANSFAC yes 21266674
chr17 57907480 57907485 SP1 TRANSFAC yes 55086687
chr17 57907483 57907490 SP1 TRANSFAC yes 21266675
chr17 57907483 57907490 SP1 TRANSFAC yes 55086688
chr17 57907483 57907493 SP1 JASPAR yes 21266676
chr17 57907483 57907493 SP1 JASPAR yes 55086689
chr17 57907484 57907492 SP1 TRANSFAC yes 21266677
chr17 57907484 57907492 SP1 TRANSFAC yes 55086690
chr17 57907484 57907493 SP1 TRANSFAC yes 21266678
chr17 57907484 57907493 SP1 TRANSFAC yes 55086691
chr17 57907484 57907494 SP1 JASPAR yes 21266679
chr17 57907484 57907494 SP1 JASPAR yes 55086692
chr17 57907485 57907490 SP1 TRANSFAC yes 21266680
chr17 57907485 57907490 SP1 TRANSFAC yes 55086693
chr17 57907486 57907491 SP1 TRANSFAC yes 21266681
chr17 57907486 57907491 SP1 TRANSFAC yes 55086694
chr17 57907486 57907492 SP1 TRANSFAC yes 21266682
chr17 57907486 57907492 SP1 TRANSFAC yes 55086695
chr17 57907489 57907499 SP1 JASPAR yes 21266683
chr17 57907489 57907499 SP1 JASPAR yes 55086696
chr17 57907524 57907537 ZBTB18 JASPAR yes 21266684
chr17 57907524 57907537 ZBTB18 JASPAR yes 55086697
chr17 57907525 57907535 NEUROG2 JASPAR yes 21266685
chr17 57907525 57907535 NEUROG2 JASPAR yes 55086698
chr17 57907531 57907544 TFAP2B JASPAR yes 21266686
chr17 57907531 57907544 TFAP2B JASPAR yes 55086699
chr17 57907545 57907563 RARA JASPAR yes 21266687
chr17 57907545 57907563 RARA JASPAR yes 55086700
chr17 57907551 57907562 E2F6 JASPAR yes 21266688
chr17 57907551 57907562 E2F6 JASPAR yes 55086701
chr17 57907554 57907562 TBX15 JASPAR yes 21266689
chr17 57907554 57907562 TBX15 JASPAR yes 55086702
chr17 57907563 57907567 NFE TRANSFAC yes 21266690
chr17 57907563 57907567 NFE TRANSFAC yes 55086703
chr17 57907570 57907581 GCM1 JASPAR yes 21266691
chr17 57907570 57907581 GCM1 JASPAR yes 55086704
chr17 57907576 57907594 MAFF JASPAR yes 21266692
chr17 57907576 57907594 MAFF JASPAR yes 55086705
chr17 57907586 57907590 H1TF2 TRANSFAC yes 21266693
chr17 57907586 57907590 NFE TRANSFAC yes 21266694
chr17 57907586 57907590 SRF TRANSFAC yes 21266695
chr17 57907586 57907590 H1TF2 TRANSFAC yes 55086706
chr17 57907586 57907590 NFE TRANSFAC yes 55086707
chr17 57907586 57907590 SRF TRANSFAC yes 55086708
chr17 57907657 57907675 RARA JASPAR yes 21266696
chr17 57907657 57907675 RARA JASPAR yes 55086709
chr17 57907663 57907674 E2F6 JASPAR yes 21266697
chr17 57907663 57907674 E2F6 JASPAR yes 55086710
chr17 57907666 57907674 TBX15 JASPAR yes 21266698
chr17 57907666 57907674 TBX15 JASPAR yes 55086711
chr17 57907667 57907681 PLAG1 JASPAR yes 21266699
chr17 57907667 57907681 PLAG1 JASPAR yes 55086712
chr17 57907672 57907679 E2F1 TRANSFAC yes 21266700
chr17 57907672 57907679 E2F1 TRANSFAC yes 55086713
chr17 57907700 57907711 FOSL2 JASPAR yes 21266701
chr17 57907700 57907711 FOSL2 JASPAR yes 55086714
chr17 57907728 57907738 HOXA13 JASPAR yes 21266702
chr17 57907728 57907738 HOXB13 JASPAR yes 21266703
chr17 57907728 57907738 HOXD13 JASPAR yes 21266704
chr17 57907728 57907738 HOXA13 JASPAR yes 55086715
chr17 57907728 57907738 HOXB13 JASPAR yes 55086716
chr17 57907728 57907738 HOXD13 JASPAR yes 55086717
chr17 57907728 57907739 HOXC13 JASPAR yes 21266705
chr17 57907728 57907739 HOXC13 JASPAR yes 55086718
chr17 57907732 57907736 TEAD2 TRANSFAC yes 21266706
chr17 57907732 57907736 TEAD2 TRANSFAC yes 55086719
chr17 57907734 57907741 NKX3-1 JASPAR yes 21266707
chr17 57907734 57907741 NKX3-1 JASPAR yes 55086720
SNP sites on vista25364[chr17:57907420-57907736]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 57907612 rs182974861 G A
POLR2A
4962058
Genes possibly regulated by vista25364[chr17:57907420-57907736]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 57936851 57970304 - TUBD1 ENSG00000108423.10 57970304 0.67 0.99 16107 37432
chr17 57970447 58027925 + RPS6KB1 ENSG00000108443.9 57970447 0.59 0.98 16108 37289
Expression level of Genes
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miRNAs possibly regulated by vista25364[chr17:57907420-57907736]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr17 57918672 57918692 + hsa-miR-21-3p MIMAT0004494 57915291 0.17776237940408293 0.710898 0.678791 730
Expression level of miRNAs
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