EnhancerDB
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  3. vista25380[chr17:58220284-58220524]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25380[chr17:58220284-58220524]
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Tissue distribution of vista25380
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Transcription factor that possibly regulate vista25380[chr17:58220284-58220524]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 58220237 58220609 CTCF UCSC Txn Factor no Conserved 108278847
chr17 58220283 58220579 SMC3 UCSC Txn Factor no Conserved 108278859
chr17 58220290 58220563 RAD21 UCSC Txn Factor no Conserved 108278863
chr17 58220302 58220306 YY1 TRANSFAC yes 21267521
chr17 58220302 58220306 YY1 TRANSFAC yes 55097963
chr17 58220314 58220324 BARHL2 JASPAR yes 21267522
chr17 58220314 58220324 BARHL2 JASPAR yes 55097964
chr17 58220326 58220344 SRF JASPAR yes 21267523
chr17 58220326 58220344 SRF JASPAR yes 55097965
chr17 58220328 58220344 SRF JASPAR yes 21267524
chr17 58220328 58220344 SRF JASPAR yes 55097966
chr17 58220328 58220346 SRF JASPAR yes 21267525
chr17 58220328 58220346 SRF JASPAR yes 55097967
chr17 58220329 58220341 SRF JASPAR yes 21267526
chr17 58220329 58220341 SRF JASPAR yes 55097968
chr17 58220336 58220357 ZNF263 JASPAR yes 21267527
chr17 58220336 58220357 ZNF263 JASPAR yes 55097969
chr17 58220348 58220359 FLI1 JASPAR yes 21267528
chr17 58220348 58220359 FLI1 JASPAR yes 55097970
chr17 58220349 58220357 EHF JASPAR yes 21267529
chr17 58220349 58220357 EHF JASPAR yes 55097971
chr17 58220353 58220368 AR JASPAR yes 21267530
chr17 58220353 58220368 AR JASPAR yes 55097972
chr17 58220353 58220370 NR3C1 JASPAR yes 21267531
chr17 58220353 58220370 NR3C1 JASPAR yes 55097973
chr17 58220409 58220428 CTCF JASPAR yes 21267532
chr17 58220409 58220428 CTCF JASPAR yes 55097974
chr17 58220418 58220430 E2F1 JASPAR yes 21267533
chr17 58220418 58220430 E2F1 JASPAR yes 55097975
chr17 58220425 58220429 H1TF2 TRANSFAC yes 21267534
chr17 58220425 58220429 NFE TRANSFAC yes 21267535
chr17 58220425 58220429 SRF TRANSFAC yes 21267536
chr17 58220425 58220429 H1TF2 TRANSFAC yes 55097976
chr17 58220425 58220429 NFE TRANSFAC yes 55097977
chr17 58220425 58220429 SRF TRANSFAC yes 55097978
chr17 58220429 58220440 CEBPA JASPAR yes 21267537
chr17 58220429 58220440 CEBPA JASPAR yes 55097979
chr17 58220430 58220450 PPARG JASPAR yes 21267538
chr17 58220430 58220450 PPARG JASPAR yes 55097980
chr17 58220435 58220446 ESRRA JASPAR yes 21267539
chr17 58220435 58220446 ESRRA JASPAR yes 55097981
chr17 58220437 58220453 ZNF143 JASPAR yes 21267540
chr17 58220437 58220453 ZNF143 JASPAR yes 55097982
chr17 58220439 58220443 LFA1 TRANSFAC yes 21267541
chr17 58220439 58220443 LFA1 TRANSFAC yes 55097983
chr17 58220469 58220473 YY1 TRANSFAC yes 21267542
chr17 58220469 58220473 YY1 TRANSFAC yes 55097984
chr17 58220502 58220522 RREB1 JASPAR yes 21267543
chr17 58220502 58220522 RREB1 JASPAR yes 55097985
chr17 58220503 58220524 ZNF263 JASPAR yes 21267544
chr17 58220503 58220524 ZNF263 JASPAR yes 55097986
chr17 58220509 58220524 NR2C2 JASPAR yes 21267545
chr17 58220509 58220524 NR2C2 JASPAR yes 55097987
chr17 58220519 58220530 TBX20 JASPAR yes 21267546
chr17 58220519 58220530 TBX20 JASPAR yes 55097988
SNP sites on vista25380[chr17:58220284-58220524]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 58220309 rs192522358 A G
CTCF RAD21 SMC3
4963311
chr17 58220407 rs146954403 G C
CTCF RAD21 SMC3
4963312
chr17 58220457 rs2627892 T G
CTCF RAD21 SMC3
4963313
chr17 58220515 rs147574393 C G,T
CTCF NR2C2 RAD21 RREB1 SMC3 ZNF263
4963314
Genes possibly regulated by vista25380[chr17:58220284-58220524]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 58120555 58156292 - HEATR6 ENSG00000068097.10 58156292 0.65 0.99 16111 36008
chr17 58227297 58248260 + CA4 ENSG00000167434.5 58227297 0.87 1.0 16112 93227
Expression level of Genes
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miRNAs possibly regulated by vista25380[chr17:58220284-58220524]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results