EnhancerDB
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  3. vista25420[chr17:59939507-59939855]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25420[chr17:59939507-59939855]
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Tissue distribution of vista25420
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Transcription factor that possibly regulate vista25420[chr17:59939507-59939855]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 59939530 59939731 ZKSCAN1 UCSC Txn Factor no Conserved 108280210
chr17 59939512 59939526 GATA2 JASPAR yes 21269243
chr17 59939516 59939524 GATA5 JASPAR yes 21269244
chr17 59939531 59939546 FOXP1 JASPAR yes 21269245
chr17 59939557 59939566 ZEB1 JASPAR yes 21269246
chr17 59939567 59939584 ZNF410 JASPAR yes 21269247
chr17 59939569 59939572 MYB TRANSFAC yes 21269248
chr17 59939575 59939588 DUXA JASPAR yes 21269249
chr17 59939576 59939587 DUX4 JASPAR yes 21269250
chr17 59939576 59939587 PHOX2A JASPAR yes 21269251
chr17 59939576 59939587 PROP1 JASPAR yes 21269252
chr17 59939596 59939600 TEAD2 TRANSFAC yes 21269253
chr17 59939612 59939622 NFIA JASPAR yes 21269254
chr17 59939613 59939622 NFIX JASPAR yes 21269255
chr17 59939614 59939620 NFIC JASPAR yes 21269256
chr17 59939627 59939643 SOX8 JASPAR yes 21269257
chr17 59939642 59939646 YY1 TRANSFAC yes 21269258
chr17 59939718 59939729 JUND JASPAR yes 21269259
chr17 59939719 59939733 JUN JASPAR yes 21269260
chr17 59939720 59939726 JUN TRANSFAC yes 21269261
chr17 59939729 59939732 MYB TRANSFAC yes 21269262
chr17 59939731 59939751 TP53 JASPAR yes 21269263
chr17 59939746 59939764 SRF JASPAR yes 21269264
chr17 59939748 59939764 SRF JASPAR yes 21269265
chr17 59939748 59939766 SRF JASPAR yes 21269266
chr17 59939749 59939761 SRF JASPAR yes 21269267
chr17 59939751 59939763 SRF JASPAR yes 21269268
chr17 59939762 59939767 MYB TRANSFAC yes 21269269
chr17 59939775 59939783 FOXC1 JASPAR yes 21269270
chr17 59939776 59939785 ZEB1 JASPAR yes 21269271
chr17 59939789 59939805 RFX2 JASPAR yes 21269272
chr17 59939793 59939805 POU2F1 JASPAR yes 21269273
chr17 59939793 59939806 POU3F3 JASPAR yes 21269274
chr17 59939793 59939807 POU1F1 JASPAR yes 21269275
chr17 59939794 59939806 POU3F1 JASPAR yes 21269276
chr17 59939794 59939806 POU3F2 JASPAR yes 21269277
chr17 59939794 59939807 POU2F2 JASPAR yes 21269278
chr17 59939808 59939825 NR3C1 JASPAR yes 21269279
chr17 59939808 59939825 NR3C2 JASPAR yes 21269280
chr17 59939808 59939826 NR3C1 JASPAR yes 21269281
chr17 59939809 59939824 ESR2 JASPAR yes 21269282
chr17 59939810 59939814 LFA1 TRANSFAC yes 21269283
chr17 59939810 59939825 AR JASPAR yes 21269284
chr17 59939824 59939827 MYB TRANSFAC yes 21269285
SNP sites on vista25420[chr17:59939507-59939855]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 59939687 rs567823137 G A
ZKSCAN1
4970267
chr17 59939798 rs7212884 T C
POU1F1 POU2F1 POU2F2 POU3F1 POU3F2 POU3F3 RFX2
4970268
chr17 59939840 rs7213026 T C no 4970269
chr17 59939848 rs77737613 A G no 4970270
Genes possibly regulated by vista25420[chr17:59939507-59939855]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 59758627 59940882 - BRIP1 ENSG00000136492.4 59940882 0.88 0.95 16123 98973
chr17 59942731 60005377 - INTS2 ENSG00000108506.7 60005377 0.57 0.99 16124 34478
Expression level of Genes
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miRNAs possibly regulated by vista25420[chr17:59939507-59939855]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results