EnhancerDB
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  3. vista25439[chr17:60728042-60728375]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista25439[chr17:60728042-60728375]
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Tissue distribution of vista25439
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Transcription factor that possibly regulate vista25439[chr17:60728042-60728375]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr17 60728036 60728046 GSC2 JASPAR yes 21270004
chr17 60728036 60728046 GSC JASPAR yes 21270005
chr17 60728036 60728046 GSC2 JASPAR yes 55203316
chr17 60728036 60728046 GSC JASPAR yes 55203317
chr17 60728037 60728045 OTX1 JASPAR yes 21270006
chr17 60728037 60728045 OTX2 JASPAR yes 21270007
chr17 60728037 60728045 OTX1 JASPAR yes 55203318
chr17 60728037 60728045 OTX2 JASPAR yes 55203319
chr17 60728037 60728046 PITX3 JASPAR yes 21270008
chr17 60728037 60728046 PITX3 JASPAR yes 55203320
chr17 60728064 60728068 NFE TRANSFAC yes 21270009
chr17 60728064 60728068 NFE TRANSFAC yes 55203321
chr17 60728104 60728110 SOX10 JASPAR yes 21270010
chr17 60728104 60728110 SOX10 JASPAR yes 55203322
chr17 60728115 60728126 HOXC12 JASPAR yes 21270011
chr17 60728115 60728126 HOXC13 JASPAR yes 21270012
chr17 60728115 60728126 HOXC12 JASPAR yes 55203323
chr17 60728115 60728126 HOXC13 JASPAR yes 55203324
chr17 60728121 60728139 ESR2 JASPAR yes 21270013
chr17 60728121 60728139 ESR2 JASPAR yes 55203325
chr17 60728123 60728138 ESR2 JASPAR yes 21270014
chr17 60728123 60728138 ESR2 JASPAR yes 55203326
chr17 60728123 60728143 ESR1 JASPAR yes 21270015
chr17 60728123 60728143 ESR1 JASPAR yes 55203327
chr17 60728131 60728146 RUNX2 JASPAR yes 21270016
chr17 60728131 60728146 RUNX2 JASPAR yes 55203328
chr17 60728140 60728144 H4TF2 TRANSFAC yes 21270017
chr17 60728140 60728144 H4TF2 TRANSFAC yes 55203329
chr17 60728150 60728161 TFAP2A JASPAR yes 21270018
chr17 60728150 60728161 TFAP2B JASPAR yes 21270019
chr17 60728150 60728161 TFAP2C JASPAR yes 21270020
chr17 60728150 60728161 TFAP2A JASPAR yes 55203330
chr17 60728150 60728161 TFAP2B JASPAR yes 55203331
chr17 60728150 60728161 TFAP2C JASPAR yes 55203332
chr17 60728151 60728160 TFAP2A JASPAR yes 21270021
chr17 60728151 60728160 TFAP2A JASPAR yes 55203333
chr17 60728156 60728160 LFA1 TRANSFAC yes 21270022
chr17 60728156 60728160 LFA1 TRANSFAC yes 55203334
chr17 60728199 60728202 MYB TRANSFAC yes 21270023
chr17 60728199 60728202 MYB TRANSFAC yes 55203335
chr17 60728207 60728211 YY1 TRANSFAC yes 21270024
chr17 60728207 60728211 YY1 TRANSFAC yes 55203336
chr17 60728219 60728231 CREB1 JASPAR yes 21270025
chr17 60728219 60728231 CREB1 JASPAR yes 55203337
chr17 60728224 60728229 ATF1 TRANSFAC yes 21270026
chr17 60728224 60728229 ATF1 TRANSFAC yes 55203338
chr17 60728224 60728232 CREB1 JASPAR yes 21270027
chr17 60728224 60728232 GMEB2 JASPAR yes 21270028
chr17 60728224 60728232 CREB1 JASPAR yes 55203339
chr17 60728224 60728232 GMEB2 JASPAR yes 55203340
chr17 60728284 60728297 DUXA JASPAR yes 21270029
chr17 60728284 60728297 DUXA JASPAR yes 55203341
chr17 60728285 60728296 DUX4 JASPAR yes 21270030
chr17 60728285 60728296 DUX4 JASPAR yes 55203342
chr17 60728308 60728323 HNF4A JASPAR yes 21270031
chr17 60728308 60728323 HNF4A JASPAR yes 55203343
chr17 60728316 60728320 H4TF2 TRANSFAC yes 21270032
chr17 60728316 60728320 H4TF2 TRANSFAC yes 55203344
chr17 60728323 60728334 STAT1 JASPAR yes 21270033
chr17 60728323 60728334 STAT1 JASPAR yes 55203345
chr17 60728324 60728329 ETS2 TRANSFAC yes 21270034
chr17 60728324 60728329 ETS2 TRANSFAC yes 55203346
chr17 60728328 60728348 TP53 JASPAR yes 21270035
chr17 60728328 60728348 TP53 JASPAR yes 55203347
chr17 60728331 60728349 TP53 JASPAR yes 21270036
chr17 60728331 60728349 TP73 JASPAR yes 21270037
chr17 60728331 60728349 TP53 JASPAR yes 55203348
chr17 60728331 60728349 TP73 JASPAR yes 55203349
chr17 60728332 60728352 TP53 JASPAR yes 21270038
chr17 60728332 60728352 TP53 JASPAR yes 55203350
chr17 60728333 60728348 TP53 JASPAR yes 21270039
chr17 60728333 60728348 TP53 JASPAR yes 55203351
chr17 60728352 60728355 MYB TRANSFAC yes 21270040
chr17 60728352 60728355 MYB TRANSFAC yes 55203352
chr17 60728366 60728381 STAT2 JASPAR yes 21270041
chr17 60728366 60728381 STAT2 JASPAR yes 55203353
chr17 60728367 60728381 STAT1 JASPAR yes 21270042
chr17 60728367 60728381 STAT1 JASPAR yes 55203354
SNP sites on vista25439[chr17:60728042-60728375]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr17 60728126 rs562923582 C T
ESR1 ESR2 HOXC12 HOXC13
4973629
chr17 60728154 rs531920282 C T
TFAP2A TFAP2B TFAP2C
4973630
chr17 60728183 rs568364898 G A no 4973631
chr17 60728259 rs144025797 A G no 4973632
chr17 60728339 rs116568752 C T
TP53 TP73
4973633
Genes possibly regulated by vista25439[chr17:60728042-60728375]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr17 60704762 60770958 + MRC2 ENSG00000011028.9 60704762 0.87 1.0 16130 76720
Expression level of Genes
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miRNAs possibly regulated by vista25439[chr17:60728042-60728375]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results