EnhancerDB
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  3. vista2677[chr1:100138206-100138591]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista2677[chr1:100138206-100138591]
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Tissue distribution of vista2677
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Transcription factor that possibly regulate vista2677[chr1:100138206-100138591]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr1 100138227 100138424 CEBPB UCSC Txn Factor no Conserved 107816550
chr1 100138211 100138220 NFIX JASPAR yes 31122228
chr1 100138211 100138220 NFIX JASPAR yes 118339028
chr1 100138211 100138221 NFIA JASPAR yes 31122229
chr1 100138211 100138221 NFIA JASPAR yes 118339029
chr1 100138213 100138219 NFIC JASPAR yes 31122230
chr1 100138213 100138219 NFIC JASPAR yes 118339030
chr1 100138250 100138265 HNF4A JASPAR yes 31122231
chr1 100138250 100138265 HNF4A JASPAR yes 118339031
chr1 100138258 100138272 RXRB JASPAR yes 31122232
chr1 100138258 100138272 RXRB JASPAR yes 118339032
chr1 100138258 100138273 HNF4G JASPAR yes 31122233
chr1 100138258 100138273 HNF4G JASPAR yes 118339033
chr1 100138268 100138278 HOXB13 JASPAR yes 31122234
chr1 100138268 100138278 HOXD13 JASPAR yes 31122235
chr1 100138268 100138278 HOXB13 JASPAR yes 118339034
chr1 100138268 100138278 HOXD13 JASPAR yes 118339035
chr1 100138269 100138279 ALX3 JASPAR yes 31122236
chr1 100138269 100138279 ESX1 JASPAR yes 31122237
chr1 100138269 100138279 GSX1 JASPAR yes 31122238
chr1 100138269 100138279 GSX2 JASPAR yes 31122239
chr1 100138269 100138279 LBX2 JASPAR yes 31122240
chr1 100138269 100138279 MIXL1 JASPAR yes 31122241
chr1 100138269 100138279 MNX1 JASPAR yes 31122242
chr1 100138269 100138279 RAX JASPAR yes 31122243
chr1 100138269 100138279 ALX3 JASPAR yes 118339036
chr1 100138269 100138279 ESX1 JASPAR yes 118339037
chr1 100138269 100138279 GSX1 JASPAR yes 118339038
chr1 100138269 100138279 GSX2 JASPAR yes 118339039
chr1 100138269 100138279 LBX2 JASPAR yes 118339040
chr1 100138269 100138279 MIXL1 JASPAR yes 118339041
chr1 100138269 100138279 MNX1 JASPAR yes 118339042
chr1 100138269 100138279 RAX JASPAR yes 118339043
chr1 100138270 100138278 BARX1 JASPAR yes 31122244
chr1 100138270 100138278 BSX JASPAR yes 31122245
chr1 100138270 100138278 DLX6 JASPAR yes 31122246
chr1 100138270 100138278 ISX JASPAR yes 31122247
chr1 100138270 100138278 LBX1 JASPAR yes 31122248
chr1 100138270 100138278 LHX9 JASPAR yes 31122249
chr1 100138270 100138278 MSX1 JASPAR yes 31122250
chr1 100138270 100138278 MSX2 JASPAR yes 31122251
chr1 100138270 100138278 NKX6-2 JASPAR yes 31122252
chr1 100138270 100138278 PRRX1 JASPAR yes 31122253
chr1 100138270 100138278 RAX2 JASPAR yes 31122254
chr1 100138270 100138278 SHOX JASPAR yes 31122255
chr1 100138270 100138278 UNCX JASPAR yes 31122256
chr1 100138270 100138278 BARX1 JASPAR yes 118339044
chr1 100138270 100138278 BSX JASPAR yes 118339045
chr1 100138270 100138278 DLX6 JASPAR yes 118339046
chr1 100138270 100138278 ISX JASPAR yes 118339047
chr1 100138270 100138278 LBX1 JASPAR yes 118339048
chr1 100138270 100138278 LHX9 JASPAR yes 118339049
chr1 100138270 100138278 MSX1 JASPAR yes 118339050
chr1 100138270 100138278 MSX2 JASPAR yes 118339051
chr1 100138270 100138278 NKX6-2 JASPAR yes 118339052
chr1 100138270 100138278 PRRX1 JASPAR yes 118339053
chr1 100138270 100138278 RAX2 JASPAR yes 118339054
chr1 100138270 100138278 SHOX JASPAR yes 118339055
chr1 100138270 100138278 UNCX JASPAR yes 118339056
chr1 100138277 100138292 AR JASPAR yes 31122257
chr1 100138277 100138292 AR JASPAR yes 118339057
chr1 100138297 100138303 HiNF-A TRANSFAC yes 31122258
chr1 100138297 100138303 HiNF-A TRANSFAC yes 118339058
chr1 100138315 100138330 NR2C2 JASPAR yes 31122259
chr1 100138315 100138330 NR2C2 JASPAR yes 118339059
chr1 100138316 100138330 RXRB JASPAR yes 31122260
chr1 100138316 100138330 RXRG JASPAR yes 31122261
chr1 100138316 100138330 RXRB JASPAR yes 118339060
chr1 100138316 100138330 RXRG JASPAR yes 118339061
chr1 100138320 100138330 RORA JASPAR yes 31122262
chr1 100138320 100138330 RORA JASPAR yes 118339062
chr1 100138321 100138334 NR2F1 JASPAR yes 31122263
chr1 100138321 100138334 NR2F1 JASPAR yes 118339063
chr1 100138323 100138331 NR4A2 JASPAR yes 31122264
chr1 100138323 100138331 NR4A2 JASPAR yes 118339064
chr1 100138325 100138329 ESR1 TRANSFAC yes 31122265
chr1 100138325 100138329 ESR1 TRANSFAC yes 118339065
chr1 100138340 100138353 JUN JASPAR yes 31122266
chr1 100138340 100138353 JUN JASPAR yes 118339066
chr1 100138343 100138355 POU2F1 JASPAR yes 31122267
chr1 100138343 100138355 POU2F1 JASPAR yes 118339067
chr1 100138343 100138356 POU3F3 JASPAR yes 31122268
chr1 100138343 100138356 POU3F3 JASPAR yes 118339068
chr1 100138343 100138357 POU1F1 JASPAR yes 31122269
chr1 100138343 100138357 POU1F1 JASPAR yes 118339069
chr1 100138344 100138357 POU2F2 JASPAR yes 31122270
chr1 100138344 100138357 POU2F2 JASPAR yes 118339070
chr1 100138345 100138354 POU5F1B JASPAR yes 31122271
chr1 100138345 100138354 POU5F1B JASPAR yes 118339071
chr1 100138346 100138353 POU2F1 TRANSFAC yes 31122272
chr1 100138346 100138353 POU2F2 TRANSFAC yes 31122273
chr1 100138346 100138353 POU2F1 TRANSFAC yes 118339072
chr1 100138346 100138353 POU2F2 TRANSFAC yes 118339073
chr1 100138370 100138375 ETS2 TRANSFAC yes 31122274
chr1 100138370 100138375 ETS2 TRANSFAC yes 118339074
chr1 100138375 100138380 GATA2 JASPAR yes 31122275
chr1 100138375 100138380 GATA2 JASPAR yes 118339075
chr1 100138432 100138450 RARA JASPAR yes 31122276
chr1 100138432 100138450 RARA JASPAR yes 118339076
chr1 100138433 100138450 ESR1 JASPAR yes 31122277
chr1 100138433 100138450 ESR1 JASPAR yes 118339077
chr1 100138434 100138449 ESR2 JASPAR yes 31122278
chr1 100138434 100138449 ESR2 JASPAR yes 118339078
chr1 100138437 100138458 ZNF263 JASPAR yes 31122279
chr1 100138437 100138458 ZNF263 JASPAR yes 118339079
chr1 100138439 100138452 NR2F1 JASPAR yes 31122280
chr1 100138439 100138452 NR2F1 JASPAR yes 118339080
chr1 100138441 100138452 ESRRA JASPAR yes 31122281
chr1 100138441 100138452 ESRRB JASPAR yes 31122282
chr1 100138441 100138452 ESRRA JASPAR yes 118339081
chr1 100138441 100138452 ESRRB JASPAR yes 118339082
chr1 100138442 100138450 NR4A2 JASPAR yes 31122283
chr1 100138442 100138450 NR4A2 JASPAR yes 118339083
chr1 100138460 100138470 POU6F2 JASPAR yes 31122284
chr1 100138460 100138470 POU6F2 JASPAR yes 118339084
chr1 100138465 100138480 PRDM1 JASPAR yes 31122285
chr1 100138465 100138480 STAT2 JASPAR yes 31122286
chr1 100138465 100138480 PRDM1 JASPAR yes 118339085
chr1 100138465 100138480 STAT2 JASPAR yes 118339086
chr1 100138472 100138476 YY1 TRANSFAC yes 31122287
chr1 100138472 100138476 YY1 TRANSFAC yes 118339087
chr1 100138475 100138487 E2F8 JASPAR yes 31122288
chr1 100138475 100138487 E2F8 JASPAR yes 118339088
chr1 100138509 100138520 DMRT3 JASPAR yes 31122289
chr1 100138509 100138520 DMRT3 JASPAR yes 118339089
chr1 100138521 100138525 LFA1 TRANSFAC yes 31122290
chr1 100138521 100138525 LFA1 TRANSFAC yes 118339090
chr1 100138556 100138570 CREB3 JASPAR yes 31122291
chr1 100138556 100138570 CREB3L1 JASPAR yes 31122292
chr1 100138556 100138570 CREB3 JASPAR yes 118339091
chr1 100138556 100138570 CREB3L1 JASPAR yes 118339092
SNP sites on vista2677[chr1:100138206-100138591]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr1 100138212 rs78228892 T C
NFIA NFIX
515598
chr1 100138226 rs191435206 G A no 515599
chr1 100138262 rs146220292 C A,T
CEBPB HNF4A HNF4G RXRB
515600
chr1 100138274 rs111886163 A T
ALX3 BARX1 BSX CEBPB DLX6 ESX1 GSX1 GSX2 HOXB13 HOXD13 ISX LBX1 LBX2 LHX9 MIXL1 MNX1 MSX1 MSX2 NKX6-2 PRRX1 RAX RAX2 SHOX UNCX
515601
chr1 100138290 rs116751148 C T
AR CEBPB
515602
chr1 100138329 rs113737500 C T
CEBPB ESR1 NR2C2 NR2F1 NR4A2 RORA RXRB RXRG
515603
chr1 100138337 rs111443645 G A
CEBPB
515604
chr1 100138410 rs185269519 C T
CEBPB
515605
chr1 100138411 rs535149555 G A
CEBPB
515606
chr1 100138500 rs74479694 G A no 515607
chr1 100138523 rs112480943 G C
LFA1
515608
Genes possibly regulated by vista2677[chr1:100138206-100138591]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr1 100111499 100160097 + PALMD ENSG00000099260.6 100111499 0.88 0.94 926 73293
chr1 100174259 100232187 - FRRS1 ENSG00000156869.8 100232187 0.62 0.99 927 6404
Expression level of Genes
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miRNAs possibly regulated by vista2677[chr1:100138206-100138591]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results