EnhancerDB
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  3. vista27497[chr18:52409898-52410241]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27497[chr18:52409898-52410241]
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Tissue distribution of vista27497
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Transcription factor that possibly regulate vista27497[chr18:52409898-52410241]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 52409919 52410139 CEBPB UCSC Txn Factor no Conserved 108337293
chr18 52409887 52409898 TBX20 JASPAR yes 42710494
chr18 52409887 52409898 TBX20 JASPAR yes 110726284
chr18 52409888 52409901 SMAD2 JASPAR yes 42710495
chr18 52409888 52409901 SMAD2 JASPAR yes 110726285
chr18 52409923 52409933 SMAD3 JASPAR yes 42710496
chr18 52409923 52409933 SMAD3 JASPAR yes 110726286
chr18 52409929 52409942 SMAD2 JASPAR yes 42710497
chr18 52409929 52409942 SMAD2 JASPAR yes 110726287
chr18 52409963 52409978 RUNX2 JASPAR yes 42710498
chr18 52409963 52409978 RUNX2 JASPAR yes 110726288
chr18 52409964 52409967 MYB TRANSFAC yes 42710499
chr18 52409964 52409967 MYB TRANSFAC yes 110726289
chr18 52409964 52409973 RUNX2 JASPAR yes 42710500
chr18 52409964 52409973 RUNX2 JASPAR yes 110726290
chr18 52409964 52409974 RUNX3 JASPAR yes 42710501
chr18 52409964 52409974 RUNX3 JASPAR yes 110726291
chr18 52409964 52409975 RUNX1 JASPAR yes 42710502
chr18 52409964 52409975 RUNX1 JASPAR yes 110726292
chr18 52409997 52410012 LEF1 JASPAR yes 42710503
chr18 52409997 52410012 LEF1 JASPAR yes 110726293
chr18 52410013 52410018 MYC TRANSFAC yes 42710504
chr18 52410013 52410018 MYC TRANSFAC yes 110726294
chr18 52410014 52410025 CEBPB JASPAR yes 42710505
chr18 52410014 52410025 CEBPB JASPAR yes 110726295
chr18 52410014 52410026 DBP JASPAR yes 42710506
chr18 52410014 52410026 HLF JASPAR yes 42710507
chr18 52410014 52410026 TEF JASPAR yes 42710508
chr18 52410014 52410026 DBP JASPAR yes 110726296
chr18 52410014 52410026 HLF JASPAR yes 110726297
chr18 52410014 52410026 TEF JASPAR yes 110726298
chr18 52410015 52410025 CEBPB JASPAR yes 42710509
chr18 52410015 52410025 CEBPD JASPAR yes 42710510
chr18 52410015 52410025 CEBPE JASPAR yes 42710511
chr18 52410015 52410025 CEBPG JASPAR yes 42710512
chr18 52410015 52410025 CEBPB JASPAR yes 110726299
chr18 52410015 52410025 CEBPD JASPAR yes 110726300
chr18 52410015 52410025 CEBPE JASPAR yes 110726301
chr18 52410015 52410025 CEBPG JASPAR yes 110726302
chr18 52410015 52410026 CEBPA JASPAR yes 42710513
chr18 52410015 52410026 CEBPA JASPAR yes 110726303
chr18 52410021 52410024 MYB TRANSFAC yes 42710514
chr18 52410021 52410024 MYB TRANSFAC yes 110726304
chr18 52410033 52410040 SPIB JASPAR yes 42710515
chr18 52410033 52410040 SPIB JASPAR yes 110726305
chr18 52410040 52410046 ZNF354C JASPAR yes 42710516
chr18 52410040 52410046 ZNF354C JASPAR yes 110726306
chr18 52410047 52410061 TLX1 JASPAR yes 42710517
chr18 52410047 52410061 TLX1 JASPAR yes 110726307
chr18 52410054 52410059 GATA2 JASPAR yes 42710518
chr18 52410054 52410059 GATA2 JASPAR yes 110726308
chr18 52410112 52410125 POU2F2 JASPAR yes 42710519
chr18 52410112 52410125 POU2F2 JASPAR yes 110726309
chr18 52410123 52410141 ESR2 JASPAR yes 42710520
chr18 52410123 52410141 ESR2 JASPAR yes 110726310
chr18 52410134 52410148 GLIS3 JASPAR yes 42710521
chr18 52410134 52410148 GLIS3 JASPAR yes 110726311
chr18 52410141 52410149 CREB1 JASPAR yes 42710522
chr18 52410141 52410149 CREB1 JASPAR yes 110726312
chr18 52410144 52410148 ESR1 TRANSFAC yes 42710523
chr18 52410144 52410148 ESR1 TRANSFAC yes 110726313
chr18 52410153 52410159 NFIC JASPAR yes 42710524
chr18 52410153 52410159 NFIC JASPAR yes 110726314
chr18 52410153 52410173 ESR1 JASPAR yes 42710525
chr18 52410153 52410173 ESR1 JASPAR yes 110726315
chr18 52410195 52410210 HSF1 JASPAR yes 42710526
chr18 52410195 52410210 HSF1 JASPAR yes 110726316
chr18 52410228 52410232 H1TF2 TRANSFAC yes 42710527
chr18 52410228 52410232 NFE TRANSFAC yes 42710528
chr18 52410228 52410232 SRF TRANSFAC yes 42710529
chr18 52410228 52410232 H1TF2 TRANSFAC yes 110726317
chr18 52410228 52410232 NFE TRANSFAC yes 110726318
chr18 52410228 52410232 SRF TRANSFAC yes 110726319
SNP sites on vista27497[chr18:52409898-52410241]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 52409898 rs146189322 G T
SMAD2 TBX20
5264933
chr18 52410015 rs542790856 A G
CEBPA CEBPB CEBPD CEBPE CEBPG DBP HLF MYC TEF
5264934
chr18 52410048 rs79120808 T C
CEBPB TLX1
5264935
Genes possibly regulated by vista27497[chr18:52409898-52410241]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 52385091 52562747 + RAB27B ENSG00000041353.5 52385091 0.83 0.93 16600 75193
Expression level of Genes
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miRNAs possibly regulated by vista27497[chr18:52409898-52410241]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results