EnhancerDB
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  3. vista27544[chr18:54384245-54384484]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27544[chr18:54384245-54384484]
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Tissue distribution of vista27544
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Transcription factor that possibly regulate vista27544[chr18:54384245-54384484]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 54384165 54384451 RUNX3 UCSC Txn Factor no Conserved 108337554
chr18 54384254 54384272 SRF JASPAR yes 42712492
chr18 54384256 54384272 SRF JASPAR yes 42712493
chr18 54384262 54384277 PRDM1 JASPAR yes 42712494
chr18 54384274 54384289 MEF2A JASPAR yes 42712495
chr18 54384275 54384287 FOXI1 JASPAR yes 42712496
chr18 54384276 54384288 MEF2A JASPAR yes 42712497
chr18 54384276 54384288 MEF2B JASPAR yes 42712498
chr18 54384276 54384288 MEF2D JASPAR yes 42712499
chr18 54384277 54384287 MEF2A JASPAR yes 42712500
chr18 54384278 54384282 YY1 TRANSFAC yes 42712501
chr18 54384292 54384303 NFKB1 JASPAR yes 42712502
chr18 54384297 54384307 MZF1 JASPAR yes 42712503
chr18 54384304 54384316 MEF2D JASPAR yes 42712504
chr18 54384305 54384317 FOXI1 JASPAR yes 42712505
chr18 54384312 54384323 RUNX1 JASPAR yes 42712506
chr18 54384342 54384348 YY1 JASPAR yes 42712507
chr18 54384344 54384364 RREB1 JASPAR yes 42712508
chr18 54384350 54384365 RUNX2 JASPAR yes 42712509
chr18 54384353 54384364 RUNX1 JASPAR yes 42712510
chr18 54384354 54384364 RUNX3 JASPAR yes 42712511
chr18 54384362 54384379 RARA JASPAR yes 42712512
chr18 54384362 54384379 RXRA JASPAR yes 42712513
chr18 54384418 54384427 SOX9 JASPAR yes 42712514
chr18 54384419 54384434 FOXP1 JASPAR yes 42712515
chr18 54384420 54384429 SRY JASPAR yes 42712516
chr18 54384420 54384431 FOXP2 JASPAR yes 42712517
chr18 54384420 54384432 FOXC2 JASPAR yes 42712518
chr18 54384421 54384429 FOXG1 JASPAR yes 42712519
chr18 54384421 54384429 FOXO3 JASPAR yes 42712520
chr18 54384421 54384432 FOXC1 JASPAR yes 42712521
chr18 54384426 54384430 TEAD2 TRANSFAC yes 42712522
chr18 54384426 54384431 TBP TRANSFAC yes 42712523
chr18 54384426 54384432 TMF TRANSFAC yes 42712524
chr18 54384431 54384440 SRY JASPAR yes 42712525
chr18 54384446 54384464 IRF2 JASPAR yes 42712526
chr18 54384452 54384467 HNF1A JASPAR yes 42712527
chr18 54384453 54384466 HNF1B JASPAR yes 42712528
chr18 54384453 54384467 POU4F1 JASPAR yes 42712529
chr18 54384453 54384469 POU4F2 JASPAR yes 42712530
chr18 54384453 54384469 POU4F3 JASPAR yes 42712531
chr18 54384454 54384466 HNF1B JASPAR yes 42712532
chr18 54384464 54384478 RORA JASPAR yes 42712533
chr18 54384467 54384477 RORA JASPAR yes 42712534
chr18 54384472 54384476 ESR1 TRANSFAC yes 42712535
SNP sites on vista27544[chr18:54384245-54384484]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 54384266 rs8088764 A G
PRDM1 RUNX3 SRF
5274205
chr18 54384453 rs552590763 CTTTAATT C
HNF1A HNF1B IRF2 POU4F1 POU4F2 POU4F3
5274206
Genes possibly regulated by vista27544[chr18:54384245-54384484]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 54264439 54318831 - TXNL1 ENSG00000091164.8 54318831 0.75 0.99 16603 34586
chr18 54318574 54698828 + WDR7 ENSG00000091157.9 54318574 0.83 0.99 16604 34329
Expression level of Genes
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miRNAs possibly regulated by vista27544[chr18:54384245-54384484]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results