EnhancerDB
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  3. vista27552[chr18:55101559-55101949]
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27552[chr18:55101559-55101949]
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Tissue distribution of vista27552
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Transcription factor that possibly regulate vista27552[chr18:55101559-55101949]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 55101578 55101597 REST JASPAR yes 42713002
chr18 55101603 55101623 RREB1 JASPAR yes 42713003
chr18 55101605 55101625 RREB1 JASPAR yes 42713004
chr18 55101607 55101627 RREB1 JASPAR yes 42713005
chr18 55101609 55101629 RREB1 JASPAR yes 42713006
chr18 55101611 55101631 RREB1 JASPAR yes 42713007
chr18 55101613 55101633 RREB1 JASPAR yes 42713008
chr18 55101615 55101635 RREB1 JASPAR yes 42713009
chr18 55101617 55101637 RREB1 JASPAR yes 42713010
chr18 55101619 55101639 RREB1 JASPAR yes 42713011
chr18 55101621 55101641 RREB1 JASPAR yes 42713012
chr18 55101623 55101643 RREB1 JASPAR yes 42713013
chr18 55101668 55101672 H4TF2 TRANSFAC yes 42713014
chr18 55101669 55101681 ZBTB7C JASPAR yes 42713015
chr18 55101670 55101682 ZBTB7A JASPAR yes 42713016
chr18 55101674 55101695 MAFG JASPAR yes 42713017
chr18 55101683 55101695 NHLH1 JASPAR yes 42713018
chr18 55101684 55101694 TFAP4 JASPAR yes 42713019
chr18 55101699 55101714 NR2C2 JASPAR yes 42713020
chr18 55101705 55101711 NFE2 TRANSFAC yes 42713021
chr18 55101709 55101720 EBF1 JASPAR yes 42713022
chr18 55101744 55101765 ZNF263 JASPAR yes 42713023
chr18 55101779 55101785 MZF1 JASPAR yes 42713024
chr18 55101818 55101822 ESR1 TRANSFAC yes 42713025
chr18 55101818 55101829 ESRRA JASPAR yes 42713026
chr18 55101846 55101867 IRF1 JASPAR yes 42713027
chr18 55101848 55101863 STAT2 JASPAR yes 42713028
chr18 55101850 55101862 IRF1 JASPAR yes 42713029
chr18 55101852 55101858 TCF4 TRANSFAC yes 42713030
chr18 55101855 55101866 CEBPA JASPAR yes 42713031
chr18 55101856 55101867 CEBPB JASPAR yes 42713032
chr18 55101880 55101886 ETS1 JASPAR yes 42713033
chr18 55101880 55101886 SPI1 JASPAR yes 42713034
chr18 55101891 55101894 MYB TRANSFAC yes 42713035
chr18 55101898 55101908 HOXB13 JASPAR yes 42713036
chr18 55101898 55101908 HOXD13 JASPAR yes 42713037
chr18 55101915 55101925 ALX3 JASPAR yes 42713038
chr18 55101915 55101925 EMX1 JASPAR yes 42713039
chr18 55101915 55101925 EMX2 JASPAR yes 42713040
chr18 55101915 55101925 EVX2 JASPAR yes 42713041
chr18 55101915 55101925 GSX2 JASPAR yes 42713042
chr18 55101915 55101925 HOXB2 JASPAR yes 42713043
chr18 55101915 55101925 HOXB3 JASPAR yes 42713044
chr18 55101915 55101925 MEOX1 JASPAR yes 42713045
chr18 55101915 55101925 MEOX2 JASPAR yes 42713046
chr18 55101915 55101925 MIXL1 JASPAR yes 42713047
chr18 55101915 55101925 MNX1 JASPAR yes 42713048
chr18 55101915 55101925 RAX JASPAR yes 42713049
chr18 55101915 55101926 HOXA10 JASPAR yes 42713050
chr18 55101916 55101924 LMX1A JASPAR yes 42713051
chr18 55101916 55101924 LMX1B JASPAR yes 42713052
chr18 55101916 55101924 NKX6-1 JASPAR yes 42713053
chr18 55101916 55101924 NKX6-2 JASPAR yes 42713054
chr18 55101916 55101924 PDX1 JASPAR yes 42713055
chr18 55101916 55101924 VAX1 JASPAR yes 42713056
chr18 55101916 55101924 VAX2 JASPAR yes 42713057
chr18 55101916 55101924 VSX1 JASPAR yes 42713058
chr18 55101917 55101928 PHOX2A JASPAR yes 42713059
chr18 55101917 55101928 PROP1 JASPAR yes 42713060
chr18 55101919 55101929 BARHL2 JASPAR yes 42713061
chr18 55101923 55101938 SOX21 JASPAR yes 42713062
chr18 55101939 55101942 MYB TRANSFAC yes 42713063
SNP sites on vista27552[chr18:55101559-55101949]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 55101605 rs566709809 G A
RREB1
5276282
chr18 55101631 rs147322608 G C
RREB1
5276283
chr18 55101654 rs7241265 T C,G no 5276284
chr18 55101824 rs371469013 C T
ESRRA
5276285
chr18 55101916 rs3760615 G A
ALX3 EMX1 EMX2 EVX2 GSX2 HOXA10 HOXB2 HOXB3 LMX1A LMX1B MEOX1 MEOX2 MIXL1 MNX1 NKX6-1 NKX6-2 PDX1 RAX VAX1 VAX2 VSX1
5276286
Genes possibly regulated by vista27552[chr18:55101559-55101949]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 55018044 55038962 + ST8SIA3 ENSG00000177511.5 55018044 0.99 1.0 16606 16485
chr18 55102917 55158529 + ONECUT2 ENSG00000119547.5 55102917 0.98 0.99 16607 99032
Expression level of Genes
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miRNAs possibly regulated by vista27552[chr18:55101559-55101949]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results