EnhancerDB
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  3. vista27559[chr18:55248353-55248745]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27559[chr18:55248353-55248745]
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Tissue distribution of vista27559
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Transcription factor that possibly regulate vista27559[chr18:55248353-55248745]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 55248404 55248415 ESRRB JASPAR yes 42713232
chr18 55248412 55248416 YY1 TRANSFAC yes 42713233
chr18 55248414 55248425 FOXB1 JASPAR yes 42713234
chr18 55248414 55248425 FOXC1 JASPAR yes 42713235
chr18 55248414 55248426 FOXC2 JASPAR yes 42713236
chr18 55248435 55248445 OLIG2 JASPAR yes 42713237
chr18 55248435 55248445 OLIG3 JASPAR yes 42713238
chr18 55248439 55248443 YY1 TRANSFAC yes 42713239
chr18 55248464 55248469 GATA2 JASPAR yes 42713240
chr18 55248469 55248479 TEAD1 JASPAR yes 42713241
chr18 55248469 55248479 TEAD4 JASPAR yes 42713242
chr18 55248472 55248488 SRF JASPAR yes 42713243
chr18 55248472 55248490 SRF JASPAR yes 42713244
chr18 55248475 55248487 SRF JASPAR yes 42713245
chr18 55248509 55248523 GLIS3 JASPAR yes 42713246
chr18 55248510 55248525 ZIC3 JASPAR yes 42713247
chr18 55248510 55248525 ZIC4 JASPAR yes 42713248
chr18 55248511 55248525 ZIC1 JASPAR yes 42713249
chr18 55248512 55248531 CTCF JASPAR yes 42713250
chr18 55248514 55248528 ZIC1 JASPAR yes 42713251
chr18 55248528 55248546 ESR1 JASPAR yes 42713252
chr18 55248541 55248550 ZEB1 JASPAR yes 42713253
chr18 55248544 55248549 USF2 TRANSFAC yes 42713254
chr18 55248554 55248571 NR3C1 JASPAR yes 42713255
chr18 55248554 55248571 NR3C2 JASPAR yes 42713256
chr18 55248559 55248570 USF1 JASPAR yes 42713257
chr18 55248560 55248570 TFEB JASPAR yes 42713258
chr18 55248560 55248570 TFEC JASPAR yes 42713259
chr18 55248560 55248571 USF2 JASPAR yes 42713260
chr18 55248572 55248584 PKNOX1 JASPAR yes 42713261
chr18 55248573 55248583 TFAP4 JASPAR yes 42713262
chr18 55248577 55248585 MEIS2 JASPAR yes 42713263
chr18 55248577 55248585 MEIS3 JASPAR yes 42713264
chr18 55248577 55248585 MEIS2 JASPAR yes 110872983
chr18 55248577 55248585 MEIS3 JASPAR yes 110872984
chr18 55248578 55248582 NFE TRANSFAC yes 42713265
chr18 55248597 55248601 H4TF2 TRANSFAC yes 42713266
chr18 55248597 55248601 H4TF2 TRANSFAC yes 110872985
chr18 55248613 55248627 STAT1 JASPAR yes 42713267
chr18 55248613 55248627 STAT1 JASPAR yes 110872986
chr18 55248613 55248628 STAT2 JASPAR yes 42713268
chr18 55248613 55248628 STAT2 JASPAR yes 110872987
chr18 55248617 55248632 IRF9 JASPAR yes 42713269
chr18 55248617 55248632 IRF9 JASPAR yes 110872988
chr18 55248618 55248632 IRF8 JASPAR yes 42713270
chr18 55248618 55248632 IRF8 JASPAR yes 110872989
chr18 55248619 55248637 IRF2 JASPAR yes 42713271
chr18 55248619 55248637 IRF2 JASPAR yes 110872990
chr18 55248634 55248644 ERF JASPAR yes 42713272
chr18 55248634 55248644 ERF JASPAR yes 110872991
chr18 55248636 55248643 SPI1 JASPAR yes 42713273
chr18 55248636 55248643 SPI1 JASPAR yes 110872992
chr18 55248646 55248658 YY1 JASPAR yes 42713274
chr18 55248646 55248658 YY1 JASPAR yes 110872993
chr18 55248649 55248655 YY1 JASPAR yes 42713275
chr18 55248649 55248655 YY1 JASPAR yes 110872994
chr18 55248653 55248664 USF2 JASPAR yes 42713276
chr18 55248653 55248664 USF2 JASPAR yes 110872995
chr18 55248662 55248674 ZBTB7C JASPAR yes 42713277
chr18 55248662 55248674 ZBTB7C JASPAR yes 110872996
chr18 55248664 55248683 RFX2 JASPAR yes 42713278
chr18 55248664 55248683 RFX2 JASPAR yes 110872997
chr18 55248666 55248681 RFX5 JASPAR yes 42713279
chr18 55248666 55248681 RFX5 JASPAR yes 110872998
chr18 55248681 55248696 RFX5 JASPAR yes 42713280
chr18 55248681 55248696 RFX5 JASPAR yes 110872999
chr18 55248689 55248698 POU3F4 JASPAR yes 42713281
chr18 55248689 55248698 POU3F4 JASPAR yes 110873000
chr18 55248693 55248706 NR2F1 JASPAR yes 42713282
chr18 55248693 55248706 NR2F1 JASPAR yes 110873001
chr18 55248694 55248712 RARA JASPAR yes 42713283
chr18 55248694 55248712 RARA JASPAR yes 110873002
chr18 55248697 55248711 RXRB JASPAR yes 42713284
chr18 55248697 55248711 RXRB JASPAR yes 110873003
chr18 55248697 55248712 NR2C2 JASPAR yes 42713285
chr18 55248697 55248712 NR2C2 JASPAR yes 110873004
chr18 55248701 55248715 SPI1 JASPAR yes 42713286
chr18 55248701 55248715 SPIC JASPAR yes 42713287
chr18 55248701 55248715 SPI1 JASPAR yes 110873005
chr18 55248701 55248715 SPIC JASPAR yes 110873006
chr18 55248704 55248714 MZF1 JASPAR yes 42713288
chr18 55248704 55248714 MZF1 JASPAR yes 110873007
chr18 55248705 55248711 MZF1 JASPAR yes 42713289
chr18 55248705 55248711 MZF1 JASPAR yes 110873008
SNP sites on vista27559[chr18:55248353-55248745]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 55248522 rs113856603 G A
CTCF GLIS3 ZIC1 ZIC3 ZIC4
5276740
chr18 55248584 rs72940378 A G
MEIS2 MEIS3 PKNOX1
5276741
Genes possibly regulated by vista27559[chr18:55248353-55248745]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 55215515 55254004 - FECH ENSG00000066926.6 55254004 0.67 0.99 16608 94741
chr18 55267888 55289445 - NARS ENSG00000134440.7 55289445 0.69 1.0 16609 59300
Expression level of Genes
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miRNAs possibly regulated by vista27559[chr18:55248353-55248745]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results