EnhancerDB
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  3. vista27560[chr18:55250571-55250884]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27560[chr18:55250571-55250884]
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Tissue distribution of vista27560
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Transcription factor that possibly regulate vista27560[chr18:55250571-55250884]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 55250368 55251130 GATA1 UCSC Txn Factor no Conserved 108337822
chr18 55250400 55250950 GATA2 UCSC Txn Factor no Conserved 108337827
chr18 55250417 55251020 POLR2A UCSC Txn Factor no Conserved 108337831
chr18 55250553 55250745 BHLHE40 UCSC Txn Factor no Conserved 108337865
chr18 55250555 55250871 EP300 UCSC Txn Factor no Conserved 108337868
chr18 55250567 55250852 TEAD4 UCSC Txn Factor no Conserved 108337872
chr18 55250583 55250839 TAL1 UCSC Txn Factor no Conserved 108337875
chr18 55250584 55250590 ETS1 JASPAR yes 42713290
chr18 55250584 55250590 ETS1 JASPAR yes 110873290
chr18 55250640 55250658 ESR1 JASPAR yes 42713291
chr18 55250640 55250658 ESR1 JASPAR yes 110873291
chr18 55250665 55250683 IRF2 JASPAR yes 42713292
chr18 55250665 55250683 IRF2 JASPAR yes 110873292
chr18 55250666 55250687 IRF1 JASPAR yes 42713293
chr18 55250666 55250687 IRF1 JASPAR yes 110873293
chr18 55250668 55250683 PRDM1 JASPAR yes 42713294
chr18 55250668 55250683 PRDM1 JASPAR yes 110873294
chr18 55250669 55250683 STAT1 JASPAR yes 42713295
chr18 55250669 55250683 STAT1 JASPAR yes 110873295
chr18 55250682 55250696 POU1F1 JASPAR yes 42713296
chr18 55250682 55250696 POU1F1 JASPAR yes 110873296
chr18 55250696 55250710 GATA2 JASPAR yes 42713297
chr18 55250696 55250710 GATA2 JASPAR yes 110873297
chr18 55250698 55250704 GATA1 TRANSFAC yes 42713298
chr18 55250698 55250704 GATA1 TRANSFAC yes 110873298
chr18 55250698 55250706 GATA5 JASPAR yes 42713299
chr18 55250698 55250706 GATA5 JASPAR yes 110873299
chr18 55250729 55250737 GATA3 JASPAR yes 42713300
chr18 55250729 55250737 GATA5 JASPAR yes 42713301
chr18 55250729 55250737 GATA3 JASPAR yes 110873300
chr18 55250729 55250737 GATA5 JASPAR yes 110873301
chr18 55250738 55250756 NR3C1 JASPAR yes 42713302
chr18 55250738 55250756 NR3C1 JASPAR yes 110873302
chr18 55250742 55250752 OLIG3 JASPAR yes 42713303
chr18 55250742 55250752 OLIG3 JASPAR yes 110873303
chr18 55250795 55250806 TBX20 JASPAR yes 42713304
chr18 55250795 55250806 TBX20 JASPAR yes 110873304
chr18 55250808 55250813 GATA2 JASPAR yes 42713305
chr18 55250808 55250813 GATA2 JASPAR yes 110873305
chr18 55250811 55250815 H1TF2 TRANSFAC yes 42713306
chr18 55250811 55250815 NFE TRANSFAC yes 42713307
chr18 55250811 55250815 SRF TRANSFAC yes 42713308
chr18 55250811 55250815 H1TF2 TRANSFAC yes 110873306
chr18 55250811 55250815 NFE TRANSFAC yes 110873307
chr18 55250811 55250815 SRF TRANSFAC yes 110873308
chr18 55250811 55250817 NFYC TRANSFAC yes 42713309
chr18 55250811 55250817 NFYC TRANSFAC yes 110873309
chr18 55250822 55250836 SPI1 JASPAR yes 42713310
chr18 55250822 55250836 SPI1 JASPAR yes 110873310
chr18 55250826 55250844 SRF JASPAR yes 42713311
chr18 55250826 55250844 SRF JASPAR yes 110873311
chr18 55250830 55250834 YY1 TRANSFAC yes 42713312
chr18 55250830 55250834 YY1 TRANSFAC yes 110873312
chr18 55250851 55250872 ZNF263 JASPAR yes 42713313
chr18 55250851 55250872 ZNF263 JASPAR yes 110873313
chr18 55250856 55250862 NFE2 TRANSFAC yes 42713314
chr18 55250856 55250862 NFE2 TRANSFAC yes 110873314
chr18 55250859 55250865 SP1 TRANSFAC yes 42713315
chr18 55250859 55250865 SP1 TRANSFAC yes 110873315
chr18 55250859 55250869 SP1 JASPAR yes 42713316
chr18 55250859 55250869 SP1 JASPAR yes 110873316
chr18 55250875 55250880 GATA2 JASPAR yes 42713317
chr18 55250875 55250880 GATA2 JASPAR yes 110873317
chr18 55250878 55250881 MYB TRANSFAC yes 42713318
chr18 55250878 55250881 MYB TRANSFAC yes 110873318
SNP sites on vista27560[chr18:55250571-55250884]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 55250580 rs371455793 G A
BHLHE40 EP300 GATA1 GATA2 POLR2A TEAD4
5276770
chr18 55250670 rs317807 G A
BHLHE40 EP300 GATA1 GATA2 IRF1 IRF2 POLR2A PRDM1 STAT1 TAL1 TEAD4
5276771
chr18 55250821 rs147667544 T C
EP300 GATA1 GATA2 POLR2A TAL1 TEAD4
5276772
Genes possibly regulated by vista27560[chr18:55250571-55250884]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
chr18 55215515 55254004 - FECH ENSG00000066926.6 55254004 0.67 0.99 16608 96880
chr18 55267888 55289445 - NARS ENSG00000134440.7 55289445 0.69 1.0 16609 61439
Expression level of Genes
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miRNAs possibly regulated by vista27560[chr18:55250571-55250884]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
Expression level of miRNAs
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No results