EnhancerDB
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  3. vista27588[chr18:55922134-55922493]
View enhancers around input chromosomal region
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Input Chromosomal region, for example: chr1:1000-10000 to view the enhancers around this region

Chromosome characteristics of vista27588[chr18:55922134-55922493]
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Tissue distribution of vista27588
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Transcription factor that possibly regulate vista27588[chr18:55922134-55922493]
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Chrom. Start End TF Name Source Predicted site? Tissue/Cell line id More
chr18 55922134 55922137 MYB TRANSFAC yes 42714621
chr18 55922153 55922168 MEF2A JASPAR yes 42714622
chr18 55922154 55922166 FOXI1 JASPAR yes 42714623
chr18 55922155 55922167 MEF2A JASPAR yes 42714624
chr18 55922155 55922167 MEF2B JASPAR yes 42714625
chr18 55922155 55922167 MEF2D JASPAR yes 42714626
chr18 55922157 55922161 YY1 TRANSFAC yes 42714627
chr18 55922170 55922180 HOXA13 JASPAR yes 42714628
chr18 55922170 55922180 HOXB13 JASPAR yes 42714629
chr18 55922170 55922180 HOXD13 JASPAR yes 42714630
chr18 55922170 55922181 HOXA10 JASPAR yes 42714631
chr18 55922171 55922180 CDX1 JASPAR yes 42714632
chr18 55922171 55922181 MNX1 JASPAR yes 42714633
chr18 55922171 55922182 CDX2 JASPAR yes 42714634
chr18 55922182 55922192 TEAD1 JASPAR yes 42714635
chr18 55922182 55922192 TEAD4 JASPAR yes 42714636
chr18 55922183 55922191 TEAD3 JASPAR yes 42714637
chr18 55922200 55922215 JUND JASPAR yes 42714638
chr18 55922201 55922214 JUN JASPAR yes 42714639
chr18 55922202 55922216 ATF7 JASPAR yes 42714640
chr18 55922202 55922216 BATF3 JASPAR yes 42714641
chr18 55922203 55922215 JDP2 JASPAR yes 42714642
chr18 55922203 55922218 JUND JASPAR yes 42714643
chr18 55922207 55922218 CDX2 JASPAR yes 42714644
chr18 55922207 55922222 MEF2C JASPAR yes 42714645
chr18 55922208 55922219 HOXA10 JASPAR yes 42714646
chr18 55922208 55922219 HOXC11 JASPAR yes 42714647
chr18 55922208 55922223 MEF2A JASPAR yes 42714648
chr18 55922209 55922218 CDX1 JASPAR yes 42714649
chr18 55922209 55922219 HOXC10 JASPAR yes 42714650
chr18 55922209 55922219 HOXD11 JASPAR yes 42714651
chr18 55922217 55922220 MYB TRANSFAC yes 42714652
chr18 55922231 55922236 GATA2 JASPAR yes 42714653
chr18 55922243 55922248 ETS2 TRANSFAC yes 42714654
chr18 55922247 55922260 NFKB1 JASPAR yes 42714655
chr18 55922247 55922260 NFKB2 JASPAR yes 42714656
chr18 55922248 55922258 REL JASPAR yes 42714657
chr18 55922257 55922272 RFX5 JASPAR yes 42714658
chr18 55922268 55922278 OLIG2 JASPAR yes 42714659
chr18 55922268 55922278 OLIG3 JASPAR yes 42714660
chr18 55922272 55922276 YY1 TRANSFAC yes 42714661
chr18 55922284 55922288 YY1 TRANSFAC yes 42714662
chr18 55922299 55922305 ETS1 JASPAR yes 42714663
chr18 55922299 55922305 SPI1 JASPAR yes 42714664
chr18 55922302 55922312 TBX21 JASPAR yes 42714665
chr18 55922302 55922313 TBX20 JASPAR yes 42714666
chr18 55922302 55922315 EOMES JASPAR yes 42714667
chr18 55922303 55922311 TBX15 JASPAR yes 42714668
chr18 55922303 55922314 E2F6 JASPAR yes 42714669
chr18 55922304 55922309 SP1 TRANSFAC yes 42714670
chr18 55922307 55922318 NFKB1 JASPAR yes 42714671
chr18 55922340 55922344 H4TF2 TRANSFAC yes 42714672
chr18 55922404 55922419 RUNX2 JASPAR yes 42714673
chr18 55922458 55922470 PKNOX1 JASPAR yes 42714674
chr18 55922458 55922470 PKNOX2 JASPAR yes 42714675
chr18 55922459 55922469 TFAP4 JASPAR yes 42714676
chr18 55922471 55922485 ZIC1 JASPAR yes 42714677
chr18 55922482 55922487 SP1 TRANSFAC yes 42714678
SNP sites on vista27588[chr18:55922134-55922493]
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chrom Position dbSNP ID Reference Allele Alternative Allele is SNP in TFBS id More
chr18 55922157 rs146551589 G A
FOXI1 MEF2A MEF2B MEF2D YY1
5283185
chr18 55922170 rs182624520 T C
HOXA10 HOXA13 HOXB13 HOXD13
5283186
chr18 55922259 rs187288738 C T
NFKB1 NFKB2 RFX5
5283187
chr18 55922314 rs565858173 A C
E2F6 EOMES NFKB1
5283188
chr18 55922480 rs539751526 G T
ZIC1
5283189
Genes possibly regulated by vista27588[chr18:55922134-55922493]
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Details of Genes
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand Gene Name Ensembl ID TSS TSI of Normal tissues TSI of Cancer tissues Distance between enhancer and TSS id More
Expression level of Genes
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No results
miRNAs possibly regulated by vista27588[chr18:55922134-55922493]
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Details of miRNAs
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom Start End Strand miRNA Name miRBase ID TSS Score TSI of Normal tissues TSI of Cancer tissues id More
chr18 56118356 56118377 + hsa-miR-122-3p MIMAT0004590 56113494 0.012425969786116283 0.941607 0.66199 790
Expression level of miRNAs
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